Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.9e-84 313.5 156 100.0
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.5e-56 221.9 127 87.4
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.6e-46 187.2 124 74.2
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 4.9e-42 174.9 124 72.6
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.2e-40 170.2 132 69.7
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 8.2e-37 157.5 124 63.7
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 8.2e-37 157.5 124 63.7
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.4e-36 156.0 125 64.8
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 6.9e-36 154.5 124 59.7
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.2e-35 153.7 125 62.4
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 2.0e-35 152.9 125 61.6
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 4.5e-35 151.8 125 63.2
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 5.9e-35 151.4 124 61.3
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 7.7e-35 151.0 124 62.9
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.0e-34 150.6 125 60.8
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.7e-34 149.8 125 61.6
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 2.2e-34 149.4 127 63.0
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.9e-34 149.1 124 56.5
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.0e-34 148.3 125 60.8
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.1e-33 147.1 125 60.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.4e-33 146.7 125 60.8
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.9e-33 146.4 125 60.8
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.5e-33 146.0 125 60.0
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.2e-33 145.2 124 58.9
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 5.5e-33 144.8 127 59.8
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 5.5e-33 144.8 124 58.9
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 5.5e-33 144.8 124 58.1
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 5.5e-33 144.8 125 59.2
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 7.2e-33 144.4 124 59.7
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 9.4e-33 144.1 125 58.4
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-32 143.3 124 57.3
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 1.6e-32 143.3 125 59.2
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.1e-32 142.9 127 58.3
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.7e-32 142.5 127 59.8
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.7e-32 142.5 125 59.2
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.6e-32 142.1 123 58.5
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.4e-31 140.2 125 60.8
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.4e-31 140.2 124 55.6
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.8e-31 139.8 124 58.1
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 2.3e-31 139.4 122 59.0
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 3.9e-31 138.7 125 56.8
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.9e-31 138.7 127 56.7
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 5.1e-31 138.3 126 57.9
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 6.7e-31 137.9 125 54.4
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-30 137.1 124 57.3
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.1e-30 137.1 125 57.6
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.5e-30 136.7 125 55.2
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 2.0e-30 136.3 125 56.8
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-30 136.0 124 56.5
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.5e-30 136.0 124 55.6
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 4.3e-30 135.2 124 56.5
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 4.3e-30 135.2 125 53.6
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 5.7e-30 134.8 125 57.6
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 5.7e-30 134.8 125 55.2
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 5.7e-30 134.8 125 54.4
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 9.7e-30 134.0 124 52.4
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 9.7e-30 134.0 126 54.8
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 9.7e-30 134.0 127 54.3
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.7e-30 134.0 127 54.3
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 9.7e-30 134.0 124 54.8
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 9.7e-30 134.0 126 55.6
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.3e-29 133.7 124 52.4
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.2e-29 132.9 125 53.6
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 2.8e-29 132.5 124 52.4
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 3.7e-29 132.1 124 53.2
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.8e-29 131.7 127 53.5
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 6.3e-29 131.3 132 50.0
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.1e-28 130.6 123 54.5
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 2.4e-28 129.4 125 52.0
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 2.4e-28 129.4 128 56.2
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 5.3e-28 128.3 128 55.5
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.2e-27 127.1 125 55.2
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 2.0e-27 126.3 125 54.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 2.6e-27 125.9 124 50.8
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.4e-27 125.6 126 51.6
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 5.9e-27 124.8 124 48.4
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 5.9e-27 124.8 124 54.8
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 7.7e-27 124.4 144 50.0
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.3e-26 123.6 124 48.4
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.7e-26 123.2 123 49.6
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.7e-26 123.2 124 49.2
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.8e-26 122.1 123 47.2
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 6.5e-26 121.3 124 48.4
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 6.5e-26 121.3 124 48.4
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 8.5e-26 120.9 124 47.6
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 8.5e-26 120.9 124 47.6
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 8.5e-26 120.9 124 46.8
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.1e-25 120.6 124 48.4
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.1e-25 120.6 124 47.6
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 2.5e-25 119.4 124 46.0
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 7.2e-25 117.9 116 47.4
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 4.7e-24 115.2 124 48.4
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-23 114.0 142 47.9
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.8e-23 113.2 123 47.2
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.3e-23 112.8 125 48.0
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 5.7e-22 108.2 124 46.0
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.3e-21 107.1 128 43.0
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.3e-21 107.1 124 45.2
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.8e-21 105.9 117 45.3
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.7e-21 105.5 125 44.0
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.7e-21 105.5 101 50.5
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.3e-18 97.1 152 42.1
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-18 96.3 124 44.4
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.2e-18 96.3 116 43.1
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-17 93.2 137 41.6
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.2e-17 92.4 142 39.4
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.5e-17 91.7 81 53.1
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.2e-17 91.3 90 52.2
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.1e-16 89.7 92 47.8
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.2e-13 79.7 90 46.7
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.8e-13 79.3 63 63.5
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.2e-13 77.8 84 47.6
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-12 76.6 65 53.8
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.1e-12 75.9 68 54.4
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 4.5e-11 72.0 63 50.8
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 4.5e-11 72.0 74 52.7
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 4.5e-11 72.0 61 60.7
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.2e-10 69.7 66 50.0
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-09 67.0 48 64.6
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-08 63.2 69 47.8
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-07 60.5 63 47.6
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.5e-06 57.0 89 37.1
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.3e-06 55.8 41 58.5


User provided reference genes

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