Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.6e-46 189.1 96 100.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.0e-26 121.3 98 70.4
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 6.4e-24 114.0 97 61.9
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 7.1e-23 110.5 97 57.7
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 7.1e-23 110.5 97 59.8
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 7.1e-23 110.5 99 61.6
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.6e-22 109.4 92 66.3
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.1e-22 109.0 96 58.3
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 4.6e-22 107.8 97 54.6
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 6.0e-22 107.5 96 55.2
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.0e-21 105.1 96 57.3
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 3.9e-21 104.8 97 57.7
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.9e-21 104.8 96 56.2
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.1e-21 104.4 98 55.1
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-20 102.8 97 56.7
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.9e-20 102.4 98 56.1
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.3e-20 101.7 97 55.7
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.3e-20 101.7 99 58.6
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 4.3e-20 101.3 96 58.3
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 7.3e-20 100.5 97 55.7
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 9.5e-20 100.1 97 56.7
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 9.5e-20 100.1 98 52.0
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.1e-19 99.0 97 54.6
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 2.1e-19 99.0 97 54.6
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.8e-19 98.6 97 55.7
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 3.6e-19 98.2 97 55.7
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.1e-18 96.7 97 55.7
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-18 96.7 96 53.1
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.8e-18 95.9 96 55.2
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.8e-18 95.9 96 55.2
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 2.3e-18 95.5 96 58.3
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.1e-18 95.1 97 55.7
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 4.0e-18 94.7 98 54.1
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.8e-18 94.0 99 57.6
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.2e-17 93.2 98 57.1
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.5e-17 92.8 97 53.6
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.4e-17 91.3 97 53.6
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.4e-17 91.3 97 53.6
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.8e-17 90.9 98 55.1
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.6e-17 90.5 97 54.6
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.9e-17 90.1 97 53.6
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.3e-16 89.7 97 54.6
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.7e-16 88.2 91 50.5
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 4.9e-16 87.8 96 46.9
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 6.4e-16 87.4 97 50.5
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 6.4e-16 87.4 68 60.3
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 8.3e-16 87.0 98 45.9
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.1e-15 86.7 95 44.2
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.1e-15 86.7 96 50.0
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.1e-15 86.7 64 65.6
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.9e-15 85.9 98 45.9
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.9e-15 85.9 102 46.1
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.4e-15 85.5 87 52.9
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.1e-15 84.7 96 47.9
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.1e-15 84.0 87 54.0
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 7.1e-15 84.0 90 47.8
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 7.1e-15 84.0 97 48.5
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 9.2e-15 83.6 107 47.7
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 9.2e-15 83.6 87 48.3
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.6e-14 82.8 98 49.0
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.1e-14 82.4 102 43.1
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.5e-14 81.6 92 48.9
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.5e-14 81.6 99 50.5
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 4.6e-14 81.3 96 44.8
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.3e-13 79.7 102 41.2
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.7e-13 79.3 106 46.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.3e-13 79.0 95 43.2
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 2.3e-13 79.0 64 59.4
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.0e-13 78.6 95 43.2
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.9e-13 78.2 87 51.7
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 3.9e-13 78.2 89 49.4
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.1e-13 77.8 85 52.9
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 6.6e-13 77.4 95 43.2
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 6.6e-13 77.4 94 46.8
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 8.6e-13 77.0 81 54.3
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 8.6e-13 77.0 95 44.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 1.5e-12 76.3 96 44.8
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.5e-12 76.3 95 49.5
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.9e-12 75.9 93 45.2
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 5.6e-12 74.3 97 43.3
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 7.3e-12 73.9 94 41.5
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 9.6e-12 73.6 98 49.0
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 9.6e-12 73.6 90 48.9
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.6e-11 72.8 100 46.0
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.8e-11 72.0 98 44.9
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.8e-11 72.0 94 41.5
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.8e-11 72.0 94 41.5
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 4.7e-11 71.2 87 47.1
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 4.7e-11 71.2 94 43.6
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 8.1e-11 70.5 96 44.8
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 8.1e-11 70.5 83 44.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.8e-10 69.3 92 42.4
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.8e-10 69.3 96 39.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.8e-10 69.3 97 41.2
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.8e-10 69.3 42 66.7
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.1e-10 68.6 94 42.6
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 3.1e-10 68.6 86 45.3
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 3.1e-10 68.6 56 60.7
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 5.2e-10 67.8 95 40.0
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 5.2e-10 67.8 103 47.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.8e-10 67.4 94 39.4
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 6.8e-10 67.4 47 59.6
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 6.8e-10 67.4 92 42.4
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 6.8e-10 67.4 88 44.3
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.9e-10 67.0 94 40.4
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.9e-10 67.0 65 49.2
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.2e-09 66.6 75 49.3
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.2e-09 66.6 65 53.8
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-09 66.2 96 39.6
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-09 66.2 86 47.7
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.5e-09 66.2 85 40.0
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.5e-09 66.2 60 48.3
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.0e-09 65.9 86 40.7
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 2.0e-09 65.9 95 43.2
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 2.0e-09 65.9 95 43.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 2.0e-09 65.9 94 44.7
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 2.0e-09 65.9 99 39.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-09 65.5 99 39.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-09 65.5 99 39.4
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 2.6e-09 65.5 96 40.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 2.6e-09 65.5 94 39.4
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 3.4e-09 65.1 87 41.4
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.4e-09 65.1 87 41.4
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.4e-09 65.1 99 39.4
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 4.4e-09 64.7 94 40.4
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.4e-09 64.7 87 41.4
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.4e-09 64.7 87 41.4
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 4.4e-09 64.7 89 40.4
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 5.8e-09 64.3 82 42.7
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.8e-09 64.3 92 38.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 7.6e-09 63.9 83 37.3
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 7.6e-09 63.9 42 61.9
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 7.6e-09 63.9 87 40.2
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.9e-09 63.5 36 75.0
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.3e-08 63.2 44 56.8
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.3e-08 63.2 91 40.7
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.3e-08 63.2 91 44.0
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.7e-08 62.8 90 47.8
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-08 62.8 98 43.9
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.2e-08 62.4 100 36.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.9e-08 62.0 92 42.4
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.8e-08 61.6 96 43.8
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 3.8e-08 61.6 96 43.8
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.8e-08 61.6 86 39.5
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 4.9e-08 61.2 92 38.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 4.9e-08 61.2 92 38.0
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 4.9e-08 61.2 106 38.7
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.9e-08 61.2 88 40.9
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.9e-08 61.2 92 37.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 6.4e-08 60.8 101 37.6
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 6.4e-08 60.8 79 46.8
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 6.4e-08 60.8 93 35.5
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 8.4e-08 60.5 89 42.7
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 8.4e-08 60.5 84 40.5
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-07 60.1 92 39.1
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 92 39.1
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 86 40.7
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.1e-07 60.1 91 42.9
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-07 60.1 86 41.9
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.4e-07 59.7 88 38.6
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 88 42.0
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.9e-07 59.3 86 40.7
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 93 36.6
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 86 40.7
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 3.2e-07 58.5 43 58.1
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.2e-07 58.2 41 61.0
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.2e-07 58.2 87 39.1
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 5.4e-07 57.8 97 38.1
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.1e-07 57.4 92 37.0
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 9.3e-07 57.0 96 35.4
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 9.3e-07 57.0 86 38.4
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 1.2e-06 56.6 80 38.8
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.6e-06 56.2 44 59.1
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.6e-06 56.2 36 66.7
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 2.7e-06 55.5 47 57.4
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 3.5e-06 55.1 34 67.6
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.8e-06 53.9 88 34.1


User provided reference genes

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