Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 3.4e-178 628.2 320 100.0
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 4.3e-101 372.1 273 72.5
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 2.7e-87 326.2 248 69.4
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 2.4e-83 313.2 222 73.0
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 2.9e-81 306.2 271 59.8
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 1.6e-79 300.4 276 61.6
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 1.8e-78 297.0 263 60.8
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 3.3e-77 292.7 267 58.4
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 4.1e-75 285.8 280 57.9
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 5.3e-75 285.4 266 60.5
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 9.1e-75 284.6 275 56.7
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 5.9e-74 282.0 279 57.3
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 6.5e-73 278.5 264 60.2
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 4.7e-71 272.3 285 55.4
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 2.3e-70 270.0 275 53.5
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 5.2e-70 268.9 263 57.8
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 5.2e-70 268.9 277 54.9
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 1.2e-69 267.7 256 58.2
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 2.0e-69 266.9 281 53.7
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 7.7e-66 255.0 267 50.2
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 3.0e-62 243.0 267 48.3
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 2.6e-61 240.0 269 48.7
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 8.3e-60 235.0 267 47.2
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 1.8e-59 233.8 271 51.7
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 2.4e-59 233.4 250 54.8
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 3.1e-59 233.0 273 51.6
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 2.9e-57 226.5 260 48.5
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 6.5e-57 225.3 242 51.2
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 3.6e-55 219.5 259 45.6
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 6.1e-55 218.8 271 48.3
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 8.0e-55 218.4 267 46.1
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 1.0e-54 218.0 282 45.7
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 1.4e-54 217.6 267 49.1
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 2.3e-54 216.9 263 45.6
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 4.9e-52 209.1 276 45.3
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 6.3e-52 208.8 268 44.8
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 1.3e-49 201.1 265 44.2
FAN11G1628 Fragaria x ananassa HOM05D007994 ORTHO05D010092 7.0e-43 178.7 233 44.6
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 3.9e-33 146.4 268 34.7
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-31 140.2 150 56.7
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 1.4e-30 137.9 123 56.1
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 3.1e-30 136.7 99 62.6
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 5.2e-30 136.0 94 64.9
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 2.2e-28 130.6 123 51.2
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 6.4e-28 129.0 262 32.4
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 6.4e-28 129.0 98 61.2
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 2.7e-26 123.6 253 34.4
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 4.6e-26 122.9 99 56.6
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 2.8e-23 113.6 108 52.8
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 1.1e-22 111.7 120 50.0
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 1.8e-22 110.9 257 31.9
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 1.8e-22 110.9 273 31.5
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 4.0e-22 109.8 258 31.4
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 3.4e-21 106.7 69 68.1
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 3.8e-20 103.2 142 40.8
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 2.4e-19 100.5 69 62.3
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 1.0e-17 95.1 93 50.5
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 8.7e-17 92.0 65 63.1
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 9.6e-16 88.6 246 28.5
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 9.6e-16 88.6 246 28.5
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 9.6e-16 88.6 246 28.5
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 9.6e-16 88.6 75 56.0
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 1.2e-15 88.2 246 28.5
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 1.2e-15 88.2 246 28.5
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 1.1e-14 85.1 65 52.3
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 2.0e-13 80.9 60 60.0
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 1.3e-12 78.2 72 45.8
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 4.9e-12 76.3 73 43.8
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 8.4e-12 75.5 81 40.7
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 1.4e-11 74.7 49 55.1
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 1.4e-11 74.7 59 49.2
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 1.4e-11 74.7 59 49.2
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 5.4e-11 72.8 69 43.5
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 3.5e-10 70.1 52 55.8
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 4.6e-10 69.7 70 40.0
FvH4_3g01690 Fragaria vesca HOM05D002950 ORTHO05D006701 6.0e-10 69.3 264 26.5
HanXRQChr17g0544541 Helianthus annuus HOM05D003287 ORTHO05D003688 1.3e-09 68.2 242 27.7
ClCG01G021760 Citrullus lanatus HOM05D002950 ORTHO05D006701 1.7e-09 67.8 259 29.0
FAN21G2270 Fragaria x ananassa HOM05D002950 ORTHO05D006701 1.7e-09 67.8 264 26.5
RcHm_v2.0_Chr5g0002541 Rosa chinensis HOM05D002950 ORTHO05D006701 1.7e-09 67.8 266 25.9
CsaV3_6G048820 Cucumis sativus L. HOM05D002950 ORTHO05D006701 2.3e-09 67.4 296 29.4
FAN25G0098 Fragaria x ananassa HOM05D002950 ORTHO05D006701 2.3e-09 67.4 264 26.5
Lalb_Chr20g0118861 Lupinus albus HOM05D002950 ORTHO05D006701 3.0e-09 67.0 270 25.9
Manes.17G028900 Manihot esculenta HOM05D002950 ORTHO05D006701 3.9e-09 66.6 263 28.1
MELO3C007410.2 Cucumis melo HOM05D002950 ORTHO05D006701 5.1e-09 66.2 281 29.5
Peaxi162Scf00102g01048 Petunia axillaris HOM05D002950 ORTHO05D009601 6.6e-09 65.9 251 28.3
PGR142G0305 Punica granatum HOM05D002950 ORTHO05D006701 6.6e-09 65.9 240 27.5
ATR0796G185 Amborella trichopoda HOM05D002950 ORTHO05D009601 2.5e-08 63.9 256 24.2
Cc11_g13740 Coffea canephora HOM05D003287 ORTHO05D003688 2.5e-08 63.9 244 27.0
Sed0010906 Sechium edule HOM05D002950 ORTHO05D009601 3.3e-08 63.5 304 26.3
TAR629G0740 Trochodendron aralioides HOM05D003322 ORTHO05D004228 7.3e-08 62.4 219 25.6
Ciclev10032232m.g Citrus clementina HOM05D003287 ORTHO05D003688 1.3e-07 61.6 254 24.8
CsaV3_3G015460 Cucumis sativus L. HOM05D002950 ORTHO05D009601 1.6e-07 61.2 267 26.2
TPR.G37104 Trifolium pratense HOM05D002950 ORTHO05D006701 1.6e-07 61.2 257 26.8
TAR264G0005 Trochodendron aralioides HOM05D003287 ORTHO05D003688 1.6e-07 61.2 250 26.4
Cpa.g.sc5.295 Carica papaya HOM05D003287 ORTHO05D003688 2.8e-07 60.5 251 21.9
Duzib160G0808 Durio zibethinus HOM05D002950 ORTHO05D006701 3.6e-07 60.1 277 26.4
MD13G1062800 Malus domestica HOM05D003287 ORTHO05D003688 4.8e-07 59.7 236 25.8
Manes.01G027500 Manihot esculenta HOM05D003287 ORTHO05D003688 4.8e-07 59.7 268 24.6
CSS0035567 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 6.2e-07 59.3 230 25.7
CSS0039777 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 6.2e-07 59.3 229 27.1
Lsat_1_v5_gn_3_53820 Lactuca sativa HOM05D000677 ORTHO05D000727 8.1e-07 58.9 252 26.6
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 8.1e-07 58.9 37 56.8
Nitab4.5_0004088g0080 Nicotiana tabacum HOM05D002950 ORTHO05D009601 8.1e-07 58.9 231 26.0
Sc04g0008570 Simmondsia chinensis HOM05D003287 ORTHO05D003688 8.1e-07 58.9 242 27.3
unitig_26.g9523 Utricularia gibba HOM05D002950 ORTHO05D006701 1.1e-06 58.5 218 28.0
Dinv16734 Davidia involucrata HOM05D003287 ORTHO05D003688 1.4e-06 58.2 251 24.7
Nitab4.5_0002052g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 1.4e-06 58.2 238 23.9
Prupe.1G286900 Prunus persica HOM05D003287 ORTHO05D003688 1.4e-06 58.2 252 23.0
Aqoxy3G03695 Aquilegia oxysepala HOM05D003287 ORTHO05D003688 1.8e-06 57.8 253 26.5
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 1.8e-06 57.8 263 24.3
Nitab4.5_0008210g0020 Nicotiana tabacum HOM05D002950 ORTHO05D009601 3.1e-06 57.0 231 26.0
Peaxi162Scf00175g00117 Petunia axillaris HOM05D003287 ORTHO05D003688 3.1e-06 57.0 250 24.4
Duzib251G0030 Durio zibethinus HOM05D003287 ORTHO05D003688 4.0e-06 56.6 247 24.7
Peaxi162Scf00026g00214 Petunia axillaris HOM05D003287 ORTHO05D003688 4.0e-06 56.6 236 24.6
Hma1.2p1_0566F.1_g179780 Hydrangea macrophylla HOM05D003287 ORTHO05D003688 5.3e-06 56.2 225 24.4
Potri.010G158500 Populus trichocarpa HOM05D003287 ORTHO05D003688 5.3e-06 56.2 259 25.1
Ciclev10033305m.g Citrus clementina HOM05D005706 ORTHO05D007474 6.9e-06 55.8 225 25.3
Lj4g0024176 Lotus japonicus HOM05D002950 ORTHO05D009601 6.9e-06 55.8 265 26.0
MD11G1158400 Malus domestica HOM05D007994 ORTHO05D010092 6.9e-06 55.8 81 44.4
Migut.N00014 Erythranthe guttata HOM05D002950 ORTHO05D009601 9.0e-06 55.5 291 24.7
Gohir.D13G082200 Gossypium hirsutum HOM05D005706 ORTHO05D007474 9.0e-06 55.5 263 24.3


User provided reference genes

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