Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 3.0e-108 395.2 199 100.0
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.2e-85 320.1 198 83.3
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 5.8e-80 301.2 199 77.9
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.0e-79 300.4 203 77.3
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 2.2e-79 299.3 199 76.9
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.2e-79 299.3 199 76.9
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 4.9e-79 298.1 203 75.9
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 6.5e-79 297.7 199 76.4
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 1.9e-78 296.2 188 81.4
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.2e-78 295.4 199 77.4
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 7.1e-78 294.3 201 76.6
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.3e-78 293.9 200 77.0
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.6e-77 293.1 203 75.4
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.7e-77 292.4 199 75.9
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.7e-77 292.4 199 75.9
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.7e-77 292.4 199 75.9
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 3.5e-77 292.0 203 75.9
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 3.5e-77 292.0 203 75.9
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 3.5e-77 292.0 200 76.0
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 7.9e-77 290.8 200 76.0
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.8e-76 289.7 203 75.4
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 1.8e-76 289.7 191 78.0
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.1e-76 288.1 199 75.9
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.5e-75 286.6 188 79.3
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.3e-75 285.4 199 74.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 4.3e-75 285.0 202 73.8
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 5.7e-75 284.6 200 74.5
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.7e-75 284.6 199 74.9
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.7e-75 284.6 199 74.9
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 5.7e-75 284.6 205 72.2
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 9.6e-75 283.9 200 73.5
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.3e-74 283.5 198 75.3
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.3e-74 283.5 203 71.9
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.6e-74 283.1 200 75.5
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.1e-74 282.7 192 77.1
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 2.8e-74 282.3 198 74.2
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 2.8e-74 282.3 200 72.5
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 4.8e-74 281.6 200 72.5
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 8.2e-74 280.8 192 76.0
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 8.2e-74 280.8 199 72.9
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.4e-73 280.0 192 75.0
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.4e-73 280.0 206 71.8
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.8e-73 279.6 202 72.8
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 2.4e-73 279.3 203 71.4
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.5e-72 276.6 199 71.9
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.5e-72 276.6 192 76.0
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 4.5e-72 275.0 198 69.7
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 5.9e-72 274.6 199 71.9
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.3e-71 273.5 198 70.7
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 2.2e-71 272.7 179 79.3
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 2.9e-71 272.3 202 70.8
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.9e-71 272.3 184 75.5
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 5.0e-71 271.6 202 70.8
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 5.0e-71 271.6 182 75.3
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 5.0e-71 271.6 201 71.1
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 6.5e-71 271.2 184 73.9
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 8.5e-71 270.8 202 70.3
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 8.5e-71 270.8 191 74.3
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.4e-70 270.0 207 69.6
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.5e-70 269.2 196 71.4
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 3.2e-70 268.9 198 68.7
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 3.2e-70 268.9 203 70.0
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.2e-70 268.9 203 70.4
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.2e-70 268.5 202 70.3
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 5.5e-70 268.1 184 73.4
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 5.5e-70 268.1 199 69.3
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 7.2e-70 267.7 197 69.5
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 7.2e-70 267.7 199 69.3
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 3.6e-69 265.4 203 68.5
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 6.1e-69 264.6 189 72.0
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 7.9e-69 264.2 196 70.9
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.0e-68 263.8 208 67.3
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.0e-68 263.8 182 73.6
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-68 263.5 198 68.7
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-68 263.5 198 69.2
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.3e-68 262.7 187 72.7
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.0e-68 262.3 182 73.1
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 3.9e-68 261.9 196 70.4
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 3.9e-68 261.9 183 73.8
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 8.7e-68 260.8 181 73.5
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 8.7e-68 260.8 181 72.4
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 8.7e-68 260.8 195 68.2
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 2.5e-67 259.2 182 72.0
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 2.5e-67 259.2 182 73.6
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 3.3e-67 258.8 183 72.1
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 7.4e-67 257.7 212 65.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 7.4e-67 257.7 185 70.8
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.3e-66 256.9 168 79.8
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.3e-66 256.9 182 72.0
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.3e-66 256.9 182 72.0
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.3e-66 256.9 203 68.0
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.6e-66 256.5 183 71.6
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.2e-66 256.1 190 71.1
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.8e-66 255.8 182 72.5
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.8e-66 255.0 168 79.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.1e-65 253.8 190 70.5
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-65 253.8 195 67.2
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.1e-65 252.3 203 65.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 9.1e-65 250.8 203 66.0
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 2.0e-64 249.6 194 68.6
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 3.4e-64 248.8 198 65.2
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.7e-63 246.5 167 76.6
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 2.9e-63 245.7 168 74.4
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.8e-63 245.4 199 67.8
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.8e-63 245.4 165 77.0
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.9e-62 243.0 171 75.4
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 3.2e-62 242.3 167 74.9
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 9.4e-62 240.7 160 78.8
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.2e-61 240.4 173 71.1
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-61 240.0 195 64.6
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.7e-61 239.2 199 62.3
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 3.0e-60 235.7 181 67.4
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 3.9e-60 235.3 163 73.0
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.1e-59 233.8 160 77.5
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 4.4e-59 231.9 195 63.6
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 5.0e-55 218.4 177 64.4
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.1e-51 207.2 184 60.3
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 7.4e-51 204.5 108 94.4
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 4.8e-50 201.8 189 52.4
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.3e-50 201.4 178 64.0
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.1e-49 200.7 158 68.4
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 2.4e-49 199.5 116 87.9
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 2.0e-48 196.4 111 84.7
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 4.5e-48 195.3 145 70.3
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.7e-47 193.4 116 80.2
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 7.2e-46 188.0 198 49.0
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 5.9e-40 168.3 149 61.7
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.7e-39 166.8 111 73.9
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.1e-38 164.1 136 65.4
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.4e-35 152.5 77 92.2
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.3e-34 150.6 149 57.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 3.7e-34 149.1 173 46.8
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.4e-33 145.2 115 67.0
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.0e-33 144.8 116 66.4
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.2e-32 144.1 123 62.6
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 5.0e-31 138.7 195 45.6
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-30 137.5 77 83.1
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 5.5e-30 135.2 93 71.0
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.2e-30 134.8 77 84.4
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.5e-30 134.4 68 91.2
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 5.4e-25 118.6 116 61.2
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 7.0e-25 118.2 105 62.9
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 2.0e-24 116.7 63 93.7
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-24 115.9 177 43.5
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.3e-20 103.2 77 67.5
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.7e-18 97.1 52 86.5
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 3.7e-18 95.9 67 70.1
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.7e-15 87.0 59 72.9
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 6.6e-15 85.1 58 67.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.9e-06 57.0 33 78.8


User provided reference genes

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