Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.7e-85 318.5 151 100.0
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 8.9e-73 276.9 142 88.7
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 2.2e-71 272.3 147 83.7
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 4.2e-70 268.1 151 83.4
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 9.3e-70 266.9 147 82.3
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 6.6e-68 260.8 151 80.8
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 5.6e-67 257.7 140 84.3
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 5.6e-67 257.7 142 83.1
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 9.6e-67 256.9 142 83.1
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 3.6e-66 255.0 146 80.8
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.8e-65 252.7 151 76.2
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.8e-65 252.7 146 77.4
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.4e-65 252.3 148 77.7
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.1e-65 251.9 149 78.5
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 4.0e-65 251.5 143 79.0
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 5.3e-65 251.1 149 78.5
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 5.3e-65 251.1 149 78.5
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 6.9e-65 250.8 154 77.9
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 9.0e-65 250.4 143 79.7
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-64 250.0 151 76.2
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.5e-64 249.6 149 75.8
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 2.0e-64 249.2 142 78.2
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 9.9e-64 246.9 149 77.2
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.2e-63 245.7 146 76.7
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 3.8e-63 245.0 155 74.2
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.8e-63 245.0 141 78.7
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.8e-63 245.0 151 76.2
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 4.9e-63 244.6 151 74.8
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 6.4e-63 244.2 149 75.8
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 4.2e-62 241.5 140 77.1
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 5.4e-62 241.1 151 74.2
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.2e-61 240.0 148 73.0
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 2.1e-61 239.2 143 78.3
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 3.5e-61 238.4 147 72.8
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 4.6e-61 238.0 151 74.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 4.6e-61 238.0 151 74.8
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 6.0e-61 237.7 148 74.3
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 6.0e-61 237.7 148 73.6
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 7.9e-61 237.3 151 73.5
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 8.7e-60 233.8 151 72.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.1e-59 233.4 136 77.9
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.1e-59 233.4 151 72.2
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.1e-59 233.4 152 71.1
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.5e-59 233.0 133 77.4
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.5e-59 233.0 140 75.0
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.9e-59 232.6 146 72.6
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.5e-59 232.3 149 73.2
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.3e-59 231.9 220 56.8
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 5.6e-59 231.1 144 73.6
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 9.6e-59 230.3 144 71.5
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 9.6e-59 230.3 147 71.4
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.6e-58 229.6 147 71.4
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.6e-58 229.6 151 74.2
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.1e-58 229.2 133 78.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 6.2e-58 227.6 134 76.1
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.1e-57 226.9 147 70.7
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.8e-57 226.1 147 71.4
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.4e-57 225.7 147 71.4
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 2.4e-57 225.7 145 69.0
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.5e-56 223.0 132 73.5
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.6e-56 222.2 144 69.4
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 7.6e-56 220.7 149 69.8
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.7e-55 219.5 134 73.1
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.7e-55 219.5 134 74.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.9e-55 218.8 134 74.6
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.8e-55 218.4 138 74.6
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 8.4e-55 217.2 134 73.9
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 8.4e-55 217.2 137 71.5
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 8.4e-55 217.2 137 71.5
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.4e-54 216.5 141 69.5
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.9e-54 216.1 164 62.8
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 4.2e-54 214.9 137 70.8
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.5e-54 214.5 133 75.2
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 7.1e-54 214.2 151 67.5
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 7.1e-54 214.2 151 67.5
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 7.1e-54 214.2 151 67.5
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 7.1e-54 214.2 130 73.8
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 7.1e-54 214.2 133 75.2
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 9.3e-54 213.8 130 73.8
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.2e-53 213.4 132 70.5
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.1e-53 212.6 147 69.4
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.1e-53 212.6 147 69.4
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.1e-53 212.6 147 69.4
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.1e-53 212.6 133 74.4
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.1e-53 212.6 131 71.8
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 3.5e-53 211.8 138 69.6
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 4.6e-53 211.5 131 71.8
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.6e-53 211.5 129 75.2
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.0e-52 210.3 145 67.6
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 3.0e-52 208.8 137 67.9
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 3.0e-52 208.8 145 69.0
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 8.7e-52 207.2 137 70.1
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.5e-51 206.5 131 71.0
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 7.4e-51 204.1 131 72.5
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 7.4e-51 204.1 133 69.9
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 9.6e-51 203.8 135 67.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 9.6e-51 203.8 135 67.4
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 9.6e-51 203.8 148 64.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 4.8e-50 201.4 133 69.2
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 6.2e-50 201.1 134 68.7
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 8.1e-50 200.7 133 71.4
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 8.1e-50 200.7 121 76.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 4.0e-49 198.4 145 65.5
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.5e-48 196.4 141 62.4
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 5.8e-48 194.5 121 72.7
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.5e-46 189.1 149 55.0
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.2e-45 186.8 132 63.6
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.1e-45 186.0 149 54.4
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 7.9e-45 184.1 122 67.2
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 6.7e-44 181.0 112 73.2
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.1e-42 176.0 150 54.0
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 2.8e-42 175.6 146 56.2
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 6.9e-41 171.0 217 43.3
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 4.5e-40 168.3 146 54.1
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.1e-38 163.7 86 87.2
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 9.3e-38 160.6 126 61.1
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.6e-32 142.5 135 51.9
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 3.4e-32 142.1 151 52.3
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.7e-31 139.8 135 47.4
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 2.2e-31 139.4 134 46.3
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 6.5e-31 137.9 136 45.6
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.1e-30 137.1 82 76.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 2.7e-29 132.5 80 76.2
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.6e-29 131.7 84 71.4
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 4.6e-29 131.7 129 49.6
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 6.1e-29 131.3 91 65.9
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-27 127.1 122 50.0
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-27 125.2 122 49.2
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 5.7e-27 124.8 122 49.2
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.7e-26 123.2 148 39.9
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.0e-23 114.0 136 40.4
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.0e-23 114.0 162 38.3
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 8.5e-23 110.9 114 47.4
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 8.5e-23 110.9 134 40.3
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 4.2e-22 108.6 89 60.7
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 9.4e-22 107.5 132 40.2
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-20 103.6 95 49.5
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 2.4e-17 92.8 56 71.4
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 7.7e-16 87.8 134 31.3
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.9e-15 85.9 57 64.9
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 3.8e-15 85.5 134 29.9
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.1e-14 84.0 57 63.2
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 8.0e-13 77.8 106 37.7
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 7.5e-11 71.2 62 50.0
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 1.7e-07 60.1 57 50.9
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 7.2e-06 54.7 36 66.7


User provided reference genes

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