Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 3.2e-72 275.0 142 100.0
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 3.2e-40 168.7 137 71.5
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 2.6e-37 159.1 97 81.4
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 4.8e-36 154.8 99 79.8
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 4.8e-36 154.8 99 79.8
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 4.1e-35 151.8 146 56.8
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.6e-34 149.1 136 64.0
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 2.6e-34 149.1 138 64.5
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 3.5e-34 148.7 106 74.5
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 3.5e-34 148.7 138 65.9
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 5.9e-34 147.9 138 61.6
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 5.9e-34 147.9 142 60.6
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 7.7e-34 147.5 136 61.8
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 1.0e-33 147.1 126 61.1
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.7e-33 146.4 136 62.5
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 2.2e-33 146.0 95 73.7
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 2.9e-33 145.6 136 62.5
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 3.8e-33 145.2 98 75.5
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 5.0e-33 144.8 100 75.0
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 5.0e-33 144.8 98 75.5
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 6.5e-33 144.4 140 57.1
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 8.5e-33 144.1 95 74.7
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 1.1e-32 143.7 93 77.4
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 1.5e-32 143.3 131 58.8
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.5e-32 143.3 140 63.6
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 2.5e-32 142.5 128 62.5
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 2.5e-32 142.5 125 65.6
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 4.2e-32 141.7 140 57.9
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 5.5e-32 141.4 96 76.0
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 5.5e-32 141.4 96 76.0
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 7.2e-32 141.0 137 60.6
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 7.2e-32 141.0 140 55.7
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 9.4e-32 140.6 98 72.4
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 9.4e-32 140.6 103 68.0
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.2e-31 140.2 99 71.7
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 1.2e-31 140.2 129 57.4
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 1.6e-31 139.8 100 71.0
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 1.6e-31 139.8 99 71.7
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 1.6e-31 139.8 107 64.5
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 1.6e-31 139.8 105 67.6
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 2.1e-31 139.4 138 61.6
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 2.7e-31 139.0 128 60.2
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 3.6e-31 138.7 74 87.8
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 3.6e-31 138.7 111 66.7
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 6.1e-31 137.9 78 82.1
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 8.0e-31 137.5 140 60.0
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 1.0e-30 137.1 138 60.9
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 1.4e-30 136.7 75 85.3
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 1.8e-30 136.3 102 65.7
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 1.8e-30 136.3 102 65.7
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 1.8e-30 136.3 95 72.6
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 2.3e-30 136.0 100 67.0
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 2.3e-30 136.0 90 73.3
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 2.3e-30 136.0 135 57.8
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 3.0e-30 135.6 100 68.0
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 4.0e-30 135.2 100 68.0
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 4.0e-30 135.2 100 68.0
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 4.0e-30 135.2 100 68.0
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 4.0e-30 135.2 103 66.0
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 4.0e-30 135.2 99 66.7
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 4.0e-30 135.2 132 58.3
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 5.2e-30 134.8 100 67.0
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 5.2e-30 134.8 100 68.0
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 6.7e-30 134.4 103 65.0
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 8.8e-30 134.0 95 66.3
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 8.8e-30 134.0 95 66.3
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 1.2e-29 133.7 93 73.1
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.2e-29 133.7 73 84.9
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 2.0e-29 132.9 79 75.9
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 2.6e-29 132.5 91 70.3
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 4.4e-29 131.7 102 63.7
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 4.4e-29 131.7 140 52.9
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 5.7e-29 131.3 76 81.6
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 5.7e-29 131.3 75 82.7
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 7.5e-29 131.0 108 63.0
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 9.7e-29 130.6 100 65.0
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 9.7e-29 130.6 104 66.3
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 9.7e-29 130.6 116 61.2
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 1.3e-28 130.2 94 68.1
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.7e-28 129.8 136 58.8
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 1.7e-28 129.8 93 69.9
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 2.8e-28 129.0 104 65.4
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 6.3e-28 127.9 118 61.0
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 8.2e-28 127.5 132 57.6
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 1.1e-27 127.1 138 55.1
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 1.1e-27 127.1 103 67.0
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 1.4e-27 126.7 155 52.9
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 2.4e-27 125.9 131 55.0
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 2.4e-27 125.9 94 62.8
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 4.1e-27 125.2 70 81.4
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 5.3e-27 124.8 94 62.8
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.2e-26 123.6 87 71.3
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 3.8e-25 118.6 143 50.3
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 2.5e-24 115.9 79 72.2
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 4.2e-24 115.2 96 56.2
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 2.7e-23 112.5 78 65.4
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 1.4e-22 110.2 81 55.6
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 1.8e-22 109.8 114 54.4
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 4.0e-22 108.6 56 89.3
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 1.5e-21 106.7 65 73.8
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 3.7e-20 102.1 74 60.8
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 2.4e-19 99.4 106 55.7
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 5.4e-19 98.2 64 67.2
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 5.9e-18 94.7 95 46.3
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 6.5e-17 91.3 70 52.9
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.2e-13 80.5 63 69.8
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 6.3e-12 74.7 86 50.0
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 1.8e-11 73.2 62 67.7
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 5.4e-11 71.6 87 48.3
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 7.8e-10 67.8 38 73.7
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 1.3e-09 67.0 34 88.2
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 7.3e-08 61.2 32 87.5
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 1.2e-07 60.5 40 67.5
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 4.7e-07 58.5 41 65.9
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 2.3e-06 56.2 42 64.3


User provided reference genes

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