Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 2343.5 1205 100.0
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1767.7 1220 77.1
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1752.6 1210 77.2
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1692.6 1188 75.5
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1522.7 1210 67.3
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1480.7 1219 65.7
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1473.0 1220 65.7
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1469.9 1222 65.4
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1454.1 1191 66.2
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1453.0 1229 65.5
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1451.0 1186 66.3
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1440.2 1209 66.0
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1436.8 1209 65.8
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1431.0 1288 62.2
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1429.8 1180 65.8
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1429.5 1219 64.6
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1425.2 1275 62.4
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1423.7 1225 63.6
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1419.1 1225 63.5
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1416.4 1216 64.5
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1416.0 1219 65.1
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1382.9 1227 63.0
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1380.5 1225 62.2
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1364.0 1186 63.1
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1349.3 1199 62.3
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1343.6 1220 62.5
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1338.6 1230 60.2
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1336.6 1175 62.5
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1335.9 1184 61.5
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1330.1 1229 59.9
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1329.7 1171 62.3
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1328.5 1176 62.8
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1326.2 1174 62.5
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1323.1 1177 62.6
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1321.2 1139 63.9
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1318.5 1170 62.3
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1313.9 1180 61.9
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1300.4 1182 61.3
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1290.8 1285 57.0
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1289.6 1220 61.1
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1288.5 1083 66.4
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1287.7 1179 60.5
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1284.2 1222 60.1
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1278.8 1218 60.8
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1254.6 1196 58.9
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1235.7 1255 57.4
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1235.3 1233 57.4
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1226.8 1235 56.0
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1226.5 1239 57.0
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1217.2 1252 56.6
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1197.2 1218 57.2
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1192.6 1170 56.2
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1183.7 1274 54.3
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1181.8 1229 54.7
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1176.8 1230 55.9
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1172.9 1242 55.0
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1167.9 1019 64.4
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1148.7 1212 54.6
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1123.2 1224 53.6
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1118.6 1238 53.1
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1105.5 1187 53.8
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1104.0 1183 54.4
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 0.0e+00 1096.6 1227 55.3
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1094.7 1236 53.2
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1087.8 1276 50.5
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 0.0e+00 1077.0 1217 51.6
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 1.6e-311 1072.8 1212 53.1
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 9.0e-309 1063.9 1167 53.0
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 2.1e-305 1052.7 1226 50.7
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 6.9e-301 1037.7 1238 50.6
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 7.6e-300 1034.2 1223 50.9
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 1.2e-297 1026.9 1188 50.3
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 1.9e-295 1019.6 1155 51.7
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 4.5e-292 1008.4 1180 50.8
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.0e-288 997.3 841 67.8
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 2.3e-288 996.1 1213 49.6
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.7e-286 989.9 1118 52.7
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 1.3e-283 980.3 1068 54.4
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.1e-281 973.0 1030 55.0
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 6.7e-272 941.4 765 68.0
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 1.7e-270 936.8 1273 46.7
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 3.1e-269 932.6 1225 45.7
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 3.6e-249 865.9 1173 44.3
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 7.0e-245 851.7 1211 43.5
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.6e-241 840.5 763 62.9
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 4.6e-236 822.4 1058 47.3
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 1.9e-221 773.9 984 47.5
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 6.6e-203 712.2 1195 41.0
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 9.0e-176 622.1 614 54.2
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 6.3e-169 599.4 1208 36.9
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 2.2e-161 574.3 1165 36.5
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.4e-144 518.5 1226 34.2
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.6e-143 515.0 1133 35.9
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 9.5e-125 452.6 620 46.8
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 3.6e-124 450.7 390 61.3
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 1.7e-110 405.2 393 54.2
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 1.4e-91 342.4 445 50.1
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 5.3e-83 313.9 502 38.4
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 2.7e-63 248.4 1294 25.9
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 2.3e-62 245.4 406 37.7
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 6.1e-47 194.1 214 50.9
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 2.4e-35 155.6 269 39.4
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 5.3e-35 154.5 263 39.9
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.8e-30 139.4 121 66.9
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 2.3e-30 139.0 92 67.4
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 6.8e-30 137.5 124 60.5
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.0e-29 136.0 86 75.6
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 4.8e-28 131.3 79 73.4
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 8.3e-28 130.6 96 63.5
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 1.4e-27 129.8 189 46.6
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 4.5e-26 124.8 162 48.1
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.0e-21 109.4 81 61.7
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 1.3e-20 106.7 145 44.1
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 5.0e-09 68.2 90 41.1
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.4e-06 60.1 74 37.8
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 4.0e-06 58.5 139 29.5


User provided reference genes

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