Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 2.2e-100 369.0 196 100.0
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 4.0e-89 331.6 194 89.2
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 5.2e-89 331.3 195 90.8
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 4.1e-86 321.6 196 88.8
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 1.7e-84 316.2 195 86.7
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 2.9e-84 315.5 195 83.6
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 2.5e-83 312.4 195 84.1
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 7.3e-83 310.8 198 84.3
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 7.3e-83 310.8 198 84.3
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 1.2e-82 310.1 194 83.0
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 2.8e-82 308.9 195 84.1
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 1.0e-81 307.0 197 83.8
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 2.3e-81 305.8 192 82.3
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 2.3e-81 305.8 196 81.6
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 6.8e-81 304.3 198 80.3
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 3.4e-80 302.0 192 82.8
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 7.5e-80 300.8 194 81.4
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 7.5e-80 300.8 196 82.1
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.2e-79 299.3 194 80.9
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 3.7e-79 298.5 196 81.6
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 6.4e-79 297.7 194 80.4
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 1.1e-78 297.0 197 80.7
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 1.4e-78 296.6 199 81.9
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 1.9e-78 296.2 199 81.4
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 3.2e-78 295.4 196 81.1
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 4.1e-78 295.0 197 79.7
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 7.0e-78 294.3 192 80.7
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 9.2e-78 293.9 199 79.4
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 1.6e-77 293.1 196 78.1
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.6e-77 293.1 196 80.1
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 2.0e-77 292.7 199 79.9
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 2.0e-77 292.7 197 78.7
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 2.7e-77 292.4 199 79.4
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 2.7e-77 292.4 196 80.1
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.7e-77 292.4 196 80.1
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.7e-77 292.4 196 79.6
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.7e-77 292.4 196 79.6
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 2.3e-76 289.3 196 79.6
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 3.0e-76 288.9 198 80.3
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 6.6e-76 287.7 196 76.5
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 6.6e-76 287.7 196 78.1
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 1.1e-75 287.0 196 75.5
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 1.1e-75 287.0 196 77.0
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 1.9e-75 286.2 199 79.9
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 3.3e-75 285.4 199 77.4
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 4.3e-75 285.0 196 77.6
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 5.6e-75 284.6 197 77.2
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 1.2e-74 283.5 195 77.4
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 2.8e-74 282.3 199 78.4
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 3.6e-74 282.0 196 76.0
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 4.7e-74 281.6 198 75.8
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 4.7e-74 281.6 197 77.2
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 4.7e-74 281.6 197 77.2
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 4.7e-74 281.6 197 77.2
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 4.7e-74 281.6 197 77.2
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 8.0e-74 280.8 197 75.6
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 1.1e-73 280.4 192 77.1
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 1.1e-73 280.4 197 78.2
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 1.4e-73 280.0 200 74.0
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 2.3e-73 279.3 197 76.6
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 2.3e-73 279.3 197 76.6
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 3.1e-73 278.9 200 77.5
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 5.2e-73 278.1 196 73.5
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 5.2e-73 278.1 197 77.7
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 5.2e-73 278.1 197 76.6
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 8.9e-73 277.3 192 77.6
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 1.2e-72 276.9 191 75.9
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 1.5e-72 276.6 200 75.5
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 1.5e-72 276.6 191 75.9
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.0e-72 276.2 192 75.5
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 3.4e-72 275.4 200 76.0
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 4.4e-72 275.0 196 73.5
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 4.4e-72 275.0 191 75.9
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 5.8e-72 274.6 196 75.5
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 1.3e-71 273.5 197 75.6
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 1.3e-71 273.5 215 72.6
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 1.7e-71 273.1 160 89.4
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.4e-70 270.0 198 75.8
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 2.4e-70 269.2 197 75.1
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 9.2e-70 267.3 192 73.4
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 9.2e-70 267.3 195 71.8
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 1.2e-69 266.9 198 75.3
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 1.6e-69 266.5 161 86.3
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 1.6e-69 266.5 197 73.6
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 4.6e-69 265.0 199 71.9
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 6.0e-69 264.6 197 74.6
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 7.8e-69 264.2 148 93.2
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 7.8e-69 264.2 197 71.6
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 1.3e-68 263.5 200 69.5
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 3.0e-68 262.3 205 72.2
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 5.0e-68 261.5 194 73.2
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 6.6e-68 261.2 197 73.6
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 6.6e-68 261.2 195 69.7
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 3.3e-67 258.8 191 74.3
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 3.3e-67 258.8 196 74.0
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 8.1e-66 254.2 188 74.5
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 6.6e-60 234.6 149 83.2
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 8.6e-60 234.2 194 61.9
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 3.4e-48 195.7 161 59.0
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 4.9e-47 191.8 141 72.3
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 2.4e-46 189.5 171 53.8
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 2.7e-45 186.0 105 93.3
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 4.0e-41 172.2 215 47.0
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.2e-40 170.6 159 54.1
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.2e-40 170.6 159 54.1
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.6e-40 169.5 159 53.5
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.6e-40 169.5 159 53.5
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 1.7e-39 166.8 103 84.5
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 3.8e-39 165.6 94 91.5
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 2.7e-37 159.5 102 81.4
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 3.5e-37 159.1 161 49.1
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 5.1e-36 155.2 103 80.6
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 1.5e-32 143.7 92 83.7
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 5.8e-32 141.7 114 70.2
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 3.2e-30 136.0 90 81.1
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 4.3e-27 125.6 88 68.2
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 9.0e-25 117.9 71 85.9
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 3.4e-24 115.9 152 41.4
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 3.5e-21 105.9 95 65.3
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 1.8e-20 103.6 167 34.1
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 1.6e-18 97.1 88 62.5
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 1.1e-17 94.4 159 32.1
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.3e-15 87.4 87 51.7
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 6.7e-12 75.1 156 32.1
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 2.5e-11 73.2 120 43.3
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 3.7e-10 69.3 44 72.7
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 5.9e-08 62.0 92 41.3
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 2.9e-07 59.7 48 66.7


User provided reference genes

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