Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.5e-184 649.4 332 100.0
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.1e-98 363.2 334 63.2
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 4.1e-94 349.0 217 78.8
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.3e-92 344.0 241 73.0
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.6e-90 337.0 224 75.0
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 2.1e-90 336.7 186 88.7
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.6e-90 335.9 213 77.0
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 4.7e-90 335.5 217 76.0
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.4e-89 334.0 208 78.4
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.8e-89 333.6 226 76.1
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 8.8e-89 331.3 232 71.6
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 2.0e-88 330.1 201 79.1
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 5.7e-88 328.6 201 82.1
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 9.7e-88 327.8 208 79.8
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.3e-87 327.4 192 84.4
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.7e-87 327.0 231 71.4
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.7e-87 327.0 201 81.6
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.2e-87 326.6 197 79.2
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.2e-87 326.6 197 79.2
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 2.2e-87 326.6 181 84.5
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 2.2e-87 326.6 364 53.0
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 2.8e-87 326.2 208 74.0
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 3.7e-87 325.9 208 79.3
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.7e-87 325.9 217 73.7
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.4e-86 323.9 183 84.2
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 1.8e-86 323.6 212 76.9
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.4e-86 323.2 201 81.6
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.4e-86 323.2 201 81.6
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 2.4e-86 323.2 244 67.2
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 3.1e-86 322.8 204 80.9
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 4.1e-86 322.4 205 78.5
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 5.3e-86 322.0 236 69.1
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 7.0e-86 321.6 227 73.6
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 7.0e-86 321.6 253 68.8
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 7.0e-86 321.6 234 69.7
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 9.1e-86 321.2 229 70.7
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.2e-85 320.9 244 67.2
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 2.0e-85 320.1 216 71.8
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.0e-85 320.1 218 74.3
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.6e-85 319.7 201 77.6
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.5e-85 319.3 227 70.0
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 4.5e-85 318.9 215 74.9
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.5e-85 318.9 198 77.3
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.5e-85 318.9 188 81.9
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.5e-85 318.9 188 80.9
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.0e-84 317.8 229 70.3
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.3e-84 317.4 213 72.3
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.3e-84 317.4 241 67.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.7e-84 317.0 220 72.7
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 2.2e-84 316.6 332 55.1
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.8e-84 315.8 198 78.3
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.5e-84 315.1 224 70.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 8.5e-84 314.7 226 70.4
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.5e-83 313.9 224 69.6
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 1.5e-83 313.9 212 76.4
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.5e-83 313.9 228 71.1
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.5e-83 313.9 220 72.7
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.9e-83 313.5 204 73.5
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 3.2e-83 312.8 206 72.8
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 5.5e-83 312.0 185 80.5
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-82 310.8 186 78.0
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.2e-82 310.8 231 69.3
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 1.6e-82 310.5 220 69.1
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.6e-82 309.3 229 67.7
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 8.0e-82 308.1 215 74.0
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 8.0e-82 308.1 209 72.7
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.0e-81 307.8 184 78.8
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.0e-81 307.8 209 72.2
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.8e-81 307.0 243 65.8
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.0e-81 306.2 204 74.5
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.8e-81 304.7 235 66.4
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.2e-80 304.3 204 74.0
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.5e-80 303.9 185 77.8
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 2.6e-80 303.1 240 65.0
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.6e-80 303.1 187 80.2
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.6e-80 303.1 206 75.2
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 7.5e-80 301.6 186 78.5
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.7e-79 300.4 231 66.2
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.8e-79 299.7 185 76.8
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 3.7e-79 299.3 172 83.1
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 6.3e-79 298.5 185 76.8
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.8e-78 297.0 185 76.2
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.8e-78 297.0 193 72.5
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.8e-78 297.0 204 71.6
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 4.1e-78 295.8 234 65.4
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 4.1e-78 295.8 231 64.9
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.0e-78 295.0 204 70.1
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 5.9e-77 292.0 209 67.5
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 7.7e-77 291.6 182 75.8
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.3e-76 290.8 236 64.8
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 2.2e-76 290.0 167 85.0
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.9e-76 289.7 249 60.6
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 2.5e-75 286.6 209 67.9
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.2e-75 285.0 199 70.9
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.1e-74 283.5 182 73.6
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.3e-73 280.0 208 65.9
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.2e-71 273.5 228 61.0
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.0e-69 266.9 148 86.5
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 1.3e-68 264.2 363 47.7
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.3e-68 264.2 217 60.8
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 1.7e-68 263.8 186 69.9
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.3e-68 263.5 185 69.7
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 8.6e-68 261.5 186 68.8
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 8.6e-68 261.5 196 64.8
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.2e-66 257.7 189 71.4
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.6e-66 257.3 169 76.9
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 2.6e-64 250.0 214 58.9
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 7.5e-64 248.4 146 81.5
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.4e-62 244.2 224 60.3
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.8e-62 243.8 171 70.2
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 7.0e-62 241.9 183 67.2
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 2.0e-61 240.4 165 75.8
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.8e-60 236.1 175 62.9
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.9e-59 233.8 175 66.3
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.0e-57 228.0 162 69.1
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.0e-57 226.1 179 60.9
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.2e-55 220.3 207 59.4
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.2e-53 214.5 179 57.5
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 2.0e-53 213.8 135 77.8
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.7e-52 210.7 118 82.2
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 3.3e-51 206.5 233 54.9
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 3.1e-49 199.9 134 74.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.0e-48 197.2 154 63.0
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 6.6e-44 182.2 181 50.8
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 8.6e-44 181.8 182 47.8
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.9e-43 180.6 118 78.0
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.1e-41 174.9 101 84.2
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 5.8e-40 169.1 108 75.9
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.9e-35 154.1 95 76.8
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.2e-34 151.4 112 67.9
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 2.1e-34 150.6 123 62.6
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 2.8e-34 150.2 101 73.3
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 3.6e-34 149.8 127 59.8
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 3.1e-33 146.7 131 59.5
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 4.4e-32 142.9 164 51.2
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 9.9e-32 141.7 134 56.0
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 2.9e-31 140.2 119 61.3
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.1e-30 138.3 191 42.9
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.9e-30 137.5 118 59.3
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.1e-26 124.0 134 50.7
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.1e-26 124.0 134 50.7
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 6.2e-26 122.5 83 74.7
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 2.0e-24 117.5 251 33.5
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 3.0e-20 103.6 67 70.1
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 5.6e-19 99.4 65 70.8
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 5.6e-19 99.4 70 67.1
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 8.1e-18 95.5 62 74.2
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.7e-13 80.5 52 75.0
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 3.5e-13 80.1 72 62.5
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.2e-10 69.3 47 70.2
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.4e-09 68.2 48 70.8
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.4e-09 68.2 48 70.8
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.8e-08 62.8 38 78.9
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 2.9e-07 60.5 34 82.4


User provided reference genes

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