Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 9.2e-86 320.5 197 100.0
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.3e-66 256.9 176 96.6
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 9.3e-54 214.2 175 80.0
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.8e-52 209.9 175 80.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.5e-46 189.5 173 71.7
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.5e-43 180.3 175 69.1
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.8e-41 173.3 163 65.6
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.6e-40 169.5 164 63.4
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.0e-39 167.5 184 60.9
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 5.0e-39 165.2 158 74.7
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 5.0e-39 165.2 164 75.0
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 8.4e-39 164.5 174 60.9
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 9.3e-38 161.0 190 61.6
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 9.3e-38 161.0 170 59.4
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.1e-37 159.8 184 63.6
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 3.5e-37 159.1 157 69.4
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 3.5e-37 159.1 157 69.4
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 3.5e-37 159.1 162 67.9
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.5e-37 159.1 162 67.9
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.5e-37 159.1 162 67.9
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 3.5e-37 159.1 162 68.5
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 7.9e-37 157.9 169 63.9
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.8e-36 156.8 168 60.7
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 2.3e-36 156.4 185 63.8
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.3e-36 156.4 159 67.9
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.3e-36 156.4 164 61.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.0e-36 156.0 163 65.0
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 8.7e-36 154.5 161 68.9
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.7e-36 154.5 164 60.4
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.1e-35 154.1 170 60.0
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.9e-35 153.3 165 65.5
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 2.5e-35 152.9 157 64.3
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 3.3e-35 152.5 160 63.1
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 4.3e-35 152.1 169 60.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.3e-35 152.1 165 65.5
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 5.7e-35 151.8 171 55.6
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 5.7e-35 151.8 170 58.2
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.4e-35 151.4 165 65.5
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.3e-34 150.6 167 65.3
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-34 150.2 175 56.0
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-34 150.2 175 56.0
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.6e-34 150.2 163 60.7
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 4.8e-34 148.7 175 56.0
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 6.3e-34 148.3 182 65.9
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.3e-34 148.3 174 51.7
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 8.2e-34 147.9 161 67.1
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.1e-33 147.5 166 62.0
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.8e-33 146.7 176 60.2
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.4e-33 146.4 162 67.9
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 2.4e-33 146.4 169 64.5
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.4e-33 146.4 174 52.3
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.3e-33 145.2 177 58.2
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.2e-32 144.1 176 63.6
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.0e-31 141.0 170 60.6
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.0e-31 141.0 162 58.0
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.0e-31 141.0 165 70.3
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.7e-31 140.2 169 56.8
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 2.9e-31 139.4 137 68.6
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 2.9e-31 139.4 171 57.9
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.4e-30 137.1 161 64.6
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.9e-30 136.7 162 66.0
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 1.9e-30 136.7 168 57.7
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 2.5e-30 136.3 184 59.2
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 3.2e-30 136.0 180 60.0
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 4.6e-29 132.1 170 63.5
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 6.1e-29 131.7 179 59.2
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 6.1e-29 131.7 168 56.5
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.4e-28 130.6 178 56.2
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 2.3e-28 129.8 180 58.3
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 3.9e-28 129.0 180 50.6
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 5.1e-28 128.6 168 57.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 8.8e-28 127.9 180 54.4
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 2.0e-27 126.7 169 59.2
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.3e-27 125.6 172 48.3
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 5.7e-27 125.2 169 55.0
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.7e-26 123.6 176 55.7
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.2e-26 123.2 172 54.7
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.2e-26 123.2 171 59.6
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 2.8e-26 122.9 169 57.4
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.8e-25 120.2 174 58.0
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 4.1e-25 119.0 159 64.8
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 4.1e-25 119.0 173 54.9
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.3e-25 118.6 117 59.8
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 5.3e-25 118.6 175 45.7
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.9e-25 118.2 179 48.0
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.5e-24 117.1 101 67.3
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 2.0e-24 116.7 160 55.0
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 2.0e-24 116.7 165 46.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.4e-24 115.9 172 50.0
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 3.4e-24 115.9 169 54.4
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.5e-24 115.5 167 54.5
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.7e-23 113.6 174 56.3
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.8e-23 112.5 146 63.0
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.8e-23 112.5 168 52.4
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 6.5e-23 111.7 172 55.8
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.1e-21 106.7 153 51.6
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 4.7e-21 105.5 155 58.7
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.4e-20 104.0 167 42.5
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.4e-20 104.0 167 42.5
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.4e-20 104.0 164 55.5
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.4e-20 104.0 164 55.5
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.1e-20 102.1 164 48.8
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.7e-20 101.7 173 39.9
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 8.8e-20 101.3 152 42.1
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 2.6e-19 99.8 83 69.9
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 9.7e-19 97.8 176 47.2
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 4.8e-18 95.5 168 44.6
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 4.8e-18 95.5 182 41.2
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 8.2e-18 94.7 132 50.0
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.8e-17 93.6 159 46.5
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.8e-17 93.6 173 52.0
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 2.4e-17 93.2 156 41.7
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 4.1e-17 92.4 182 40.1
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 4.5e-16 89.0 168 39.3
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.7e-15 87.0 157 41.4
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.9e-15 86.3 139 53.2
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 6.5e-15 85.1 171 42.7
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.9e-14 83.6 182 43.4
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.5e-14 83.2 171 36.3
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 4.2e-14 82.4 139 51.1
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 3.6e-13 79.3 150 39.3
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 8.0e-13 78.2 157 42.7
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.0e-12 77.8 136 43.4
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.8e-12 77.0 155 49.0
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.8e-12 77.0 151 41.1
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.3e-12 76.6 155 48.4
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 5.2e-12 75.5 157 42.0
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.5e-11 73.9 166 34.9
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.0e-11 73.6 176 47.7
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.6e-11 73.2 162 36.4
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 5.7e-11 72.0 177 30.5
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 7.4e-11 71.6 144 39.6
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 7.4e-11 71.6 165 43.0
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.3e-10 70.9 165 35.8
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 3.7e-10 69.3 164 34.1
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 4.8e-10 68.9 152 36.8
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.4e-09 67.4 98 60.2
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 4.1e-09 65.9 158 39.9
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.0e-08 63.5 177 43.5
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 7.7e-08 61.6 162 34.0
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-07 60.5 148 36.5
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 2.2e-07 60.1 163 32.5
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.9e-07 59.7 154 35.1
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 6.5e-07 58.5 148 35.8
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.9e-06 57.0 131 36.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 1.9e-06 57.0 151 37.7
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 2.5e-06 56.6 157 31.8
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 7.2e-06 55.1 148 33.8
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 7.2e-06 55.1 148 33.8
Sp2g30690 Schrenkiella parvula HOM05D023070 ORTHO05D023654 9.4e-06 54.7 129 47.3


User provided reference genes

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