Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G119800 Carya illinoinensis HOM05D000003 ORTHO05D013566 3.0e-72 275.0 133 100.0
CiPaw.16G069900 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.2e-23 113.6 141 39.0
CiPaw.03G190200 Carya illinoinensis HOM05D000003 ORTHO05D000167 1.3e-22 110.2 136 41.2
Haze_13874 Corylus avellana HOM05D016406 ORTHO05D000167 4.2e-18 95.1 139 35.3
CiPaw.13G120800 Carya illinoinensis HOM05D000003 ORTHO05D013566 1.2e-17 93.6 126 42.9
Haze_05255 Corylus avellana HOM05D000111 ORTHO05D001334 1.5e-15 86.7 144 33.3
CiPaw.07G069100 Carya illinoinensis HOM05D000003 ORTHO05D000167 6.3e-14 81.3 106 37.7
Haze_05999 Corylus avellana HOM05D017217 ORTHO05D013566 5.4e-13 78.2 99 39.4
CiPaw.05G068400 Carya illinoinensis HOM05D000003 ORTHO05D000004 9.2e-13 77.4 126 32.5
TWI12G1409 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 1.2e-12 77.0 139 35.3
CiPaw.08G150600 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.6e-12 76.6 141 31.2
TWI75G0193 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.0e-12 76.3 141 31.9
TWI23G0529 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.7e-12 75.9 141 31.2
CiPaw.14G093100 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.5e-12 75.5 109 33.9
TWI31G1374 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.5e-12 75.5 142 32.4
Haze_16573 Corylus avellana HOM05D001354 ORTHO05D002582 4.5e-12 75.1 134 32.8
TWI32G0681 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.5e-12 75.1 142 31.7
TWI53G0004 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.5e-12 75.1 142 31.7
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-11 73.9 99 37.4
Haze_08252 Corylus avellana HOM05D009546 ORTHO05D014580 1.3e-11 73.6 142 26.1
Haze_05257 Corylus avellana HOM05D009546 ORTHO05D000167 1.7e-11 73.2 129 31.0
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 2.3e-11 72.8 140 28.6
CiPaw.05G213600 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.9e-11 72.4 118 31.4
TWI14G0340 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.9e-11 72.0 136 32.4
TWI32G0745 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.6e-11 71.2 142 30.3
Haze_12949 Corylus avellana HOM05D000003 ORTHO05D000167 8.6e-11 70.9 136 33.1
Haze_16283 Corylus avellana HOM05D012052 ORTHO05D013566 8.6e-11 70.9 101 33.7
EL10Ac1g01308 Beta vulgaris HOM05D000003 ORTHO05D000167 1.1e-10 70.5 138 34.8
CiPaw.16G041700 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.1e-10 70.5 106 33.0
CiPaw.15G109000 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.5e-10 70.1 128 30.5
Haze_16043 Corylus avellana HOM05D032658 ORTHO05D000167 1.9e-10 69.7 97 38.1
QL05p053348 Quercus lobata HOM05D000003 ORTHO05D000167 1.9e-10 69.7 141 27.7
Atru.chr5.1907 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-10 68.6 134 29.9
Haze_09308 Corylus avellana HOM05D001621 ORTHO05D000167 5.6e-10 68.2 141 30.5
Cc11_g00430 Coffea canephora HOM05D000003 ORTHO05D000167 1.2e-09 67.0 146 30.8
QL09p043312 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-09 67.0 140 29.3
CiPaw.09G152300 Carya illinoinensis HOM05D000003 ORTHO05D000167 1.6e-09 66.6 132 32.6
Atru.chr13.1831 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-09 65.5 127 30.7
Atru.chr4.686 Acer truncatum HOM05D000003 ORTHO05D000126 3.6e-09 65.5 141 25.5
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 3.6e-09 65.5 140 30.7
CiPaw.15G035300 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.6e-09 65.5 144 28.5
CiPaw.15G166300 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.6e-09 65.5 143 26.6
CiPaw.16G035600 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.6e-09 65.5 73 43.8
TWI73G0607 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.7e-09 65.1 137 33.6
Atru.chr13.1294 Acer truncatum HOM05D000003 ORTHO05D000167 6.1e-09 64.7 141 24.8
CiPaw.08G120100 Carya illinoinensis HOM05D000003 ORTHO05D000004 6.1e-09 64.7 103 31.1
CiPaw.11G073400 Carya illinoinensis HOM05D000003 ORTHO05D000004 6.1e-09 64.7 141 31.2
Atru.chr9.663 Acer truncatum HOM05D000003 ORTHO05D000167 8.0e-09 64.3 141 27.7
CiPaw.01G096600 Carya illinoinensis HOM05D000003 ORTHO05D000167 1.0e-08 63.9 132 29.5
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-08 63.5 141 30.5
CANSAT64G0231 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-08 63.5 100 36.0
QL10p056321 Quercus lobata HOM05D000003 ORTHO05D000167 1.4e-08 63.5 135 30.4
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.4e-08 63.5 142 26.8
CiPaw.14G039600 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.8e-08 63.2 99 32.3
Haze_23484 Corylus avellana HOM05D062968 ORTHO05D016203 1.8e-08 63.2 117 31.6
PSO170G1515 Papaver somniferum HOM05D000003 ORTHO05D001026 1.8e-08 63.2 137 31.4
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 1.8e-08 63.2 133 30.1
CiPaw.01G080900 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.3e-08 62.8 135 30.4
CiPaw.03G196400 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.3e-08 62.8 90 34.4
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-08 62.8 142 25.4
TWI18G0223 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.3e-08 62.8 97 35.1
TWI53G0186 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.3e-08 62.8 135 27.4
COL.COLO4_20392 Corchorus olitorius HOM05D000003 ORTHO05D000167 3.1e-08 62.4 134 28.4
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-08 62.0 127 26.8
QL03p039168 Quercus lobata HOM05D000003 ORTHO05D000167 4.0e-08 62.0 141 25.5
QL07p019929 Quercus lobata HOM05D000003 ORTHO05D000004 4.0e-08 62.0 135 31.1
QL11p036979 Quercus lobata HOM05D000003 ORTHO05D000167 4.0e-08 62.0 141 29.8
Atru.chr9.1321 Acer truncatum HOM05D000003 ORTHO05D000167 5.2e-08 61.6 127 28.3
Ah.08g219170 Amaranthus hybridus HOM05D000003 ORTHO05D000004 5.2e-08 61.6 123 30.9
CiPaw.02G051300 Carya illinoinensis HOM05D000003 ORTHO05D000004 5.2e-08 61.6 90 32.2
CiPaw.03G161500 Carya illinoinensis HOM05D000003 ORTHO05D000004 5.2e-08 61.6 97 33.0
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 6.8e-08 61.2 141 25.5
Haze_27770 Corylus avellana HOM05D009546 ORTHO05D013566 6.8e-08 61.2 80 33.8
QL05p018687 Quercus lobata HOM05D000106 ORTHO05D000160 6.8e-08 61.2 96 32.3
Atru.chr2.2033 Acer truncatum HOM05D000003 ORTHO05D000167 8.9e-08 60.8 143 30.1
CiPaw.01G090400 Carya illinoinensis HOM05D000003 ORTHO05D000167 8.9e-08 60.8 138 28.3
CiPaw.11G082900 Carya illinoinensis HOM05D000003 ORTHO05D000004 8.9e-08 60.8 104 34.6
RcHm_v2.0_Chr4g0389021 Rosa chinensis HOM05D000003 ORTHO05D000167 8.9e-08 60.8 117 33.3
CANSAT56G3747 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-07 60.5 144 32.6
CANSAT78G0319 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-07 60.5 119 29.4
CiPaw.07G081000 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.2e-07 60.5 104 32.7
Atru.chr13.2083 Acer truncatum HOM05D000003 ORTHO05D000006 1.5e-07 60.1 126 27.0
Atru.chr2.1340 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-07 60.1 113 31.0
Haze_13888 Corylus avellana HOM05D009031 ORTHO05D000167 1.5e-07 60.1 145 29.7
Haze_27622 Corylus avellana HOM05D000003 ORTHO05D000167 1.5e-07 60.1 80 40.0
Atru.chr1.763 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-07 59.7 141 27.7
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-07 59.7 140 27.1
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-07 59.7 116 31.9
AUR62035911 Chenopodium quinoa HOM05D000003 ORTHO05D000004 2.0e-07 59.7 142 27.5
Manes.10G073737 Manihot esculenta HOM05D000003 ORTHO05D000004 2.0e-07 59.7 131 26.0
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-07 59.7 142 25.4
Atru.chr10.362 Acer truncatum HOM05D000003 ORTHO05D000167 2.6e-07 59.3 143 28.7
CANSAT21G0265 Cannabis sativa HOM05D000003 ORTHO05D000167 2.6e-07 59.3 119 28.6
CiPaw.09G167800 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.6e-07 59.3 95 34.7
Duzib235G0850 Durio zibethinus HOM05D000003 ORTHO05D000167 2.6e-07 59.3 140 29.3
QL11p039844 Quercus lobata HOM05D000003 ORTHO05D011877 2.6e-07 59.3 143 31.5
QL12p032525 Quercus lobata HOM05D000003 ORTHO05D000167 2.6e-07 59.3 139 27.3
CANSAT35G0981 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-07 58.9 108 30.6
Haze_16683 Corylus avellana HOM05D000003 ORTHO05D000167 3.4e-07 58.9 103 35.9
Haze_23734 Corylus avellana HOM05D009546 ORTHO05D000167 3.4e-07 58.9 100 31.0
FvH4_3g05211 Fragaria vesca HOM05D000003 ORTHO05D000022 3.4e-07 58.9 134 28.4
TWI09G0364 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 3.4e-07 58.9 135 29.6
Atru.chr13.1583 Acer truncatum HOM05D000003 ORTHO05D000167 4.4e-07 58.5 132 31.8
Atru.chr6.486 Acer truncatum HOM05D000003 ORTHO05D000167 4.4e-07 58.5 132 26.5
Aa31sc214G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.4e-07 58.5 135 30.4
Ah.10g028600 Amaranthus hybridus HOM05D021079 ORTHO05D000167 4.4e-07 58.5 135 28.9
Ah.10g028840 Amaranthus hybridus HOM05D021079 ORTHO05D000167 4.4e-07 58.5 135 28.9
Aqoxy1G03488 Aquilegia oxysepala HOM05D009330 ORTHO05D001026 4.4e-07 58.5 99 32.3
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 4.4e-07 58.5 134 33.6
PSO063G5365 Papaver somniferum HOM05D000003 ORTHO05D000004 4.4e-07 58.5 133 30.1
PSO170G3207 Papaver somniferum HOM05D003407 ORTHO05D001026 4.4e-07 58.5 139 30.9
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 4.4e-07 58.5 144 29.9
Atru.chr6.1082 Acer truncatum HOM05D000003 ORTHO05D000167 5.8e-07 58.2 101 34.7
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 5.8e-07 58.2 96 30.2
PSO210G1914 Papaver somniferum HOM05D003407 ORTHO05D001026 5.8e-07 58.2 138 31.2
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 7.5e-07 57.8 131 29.8
PSO063G2524 Papaver somniferum HOM05D000003 ORTHO05D000004 7.5e-07 57.8 88 35.2
PSO478G1036 Papaver somniferum HOM05D003407 ORTHO05D001026 7.5e-07 57.8 140 30.0
QL09p001270 Quercus lobata HOM05D000003 ORTHO05D000167 7.5e-07 57.8 79 36.7
RcHm_v2.0_Chr4g0415961 Rosa chinensis HOM05D000003 ORTHO05D000167 7.5e-07 57.8 135 26.7
Atru.chr6.1815 Acer truncatum HOM05D000003 ORTHO05D000167 9.8e-07 57.4 141 21.3
CiPaw.11G093000 Carya illinoinensis HOM05D000003 ORTHO05D000004 9.8e-07 57.4 101 28.7
CiPaw.13G119100 Carya illinoinensis HOM05D000003 ORTHO05D000004 9.8e-07 57.4 134 29.1
Atru.chr1.3159 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-06 57.0 132 25.0
Atru.chr2.2758 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-06 57.0 112 31.2
Atru.chr5.1709 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-06 57.0 120 31.7
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-06 57.0 146 24.0
PSO017G2056 Papaver somniferum HOM05D000003 ORTHO05D001026 1.3e-06 57.0 105 29.5
PSO832G3671 Papaver somniferum HOM05D000003 ORTHO05D001026 1.3e-06 57.0 136 27.2
QL04p064882 Quercus lobata HOM05D000003 ORTHO05D000167 1.3e-06 57.0 79 38.0
QL93p0215_0031 Quercus lobata HOM05D000003 ORTHO05D000167 1.3e-06 57.0 79 38.0
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 1.3e-06 57.0 104 30.8
Atru.chr10.1041 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 56.6 101 32.7
Atru.chr8.1648 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 56.6 143 27.3
CSS0031955 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 1.7e-06 56.6 138 27.5
PSO063G1602 Papaver somniferum HOM05D000003 ORTHO05D001026 1.7e-06 56.6 136 30.1
PSO210G4902 Papaver somniferum HOM05D003407 ORTHO05D001026 1.7e-06 56.6 132 31.8
QL02p011410 Quercus lobata HOM05D000003 ORTHO05D000004 1.7e-06 56.6 147 27.9
CANSAT21G1260 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 56.2 97 34.0
CiPaw.15G048300 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.2e-06 56.2 101 30.7
COL.COLO4_10225 Corchorus olitorius HOM05D000003 ORTHO05D000167 2.2e-06 56.2 139 27.3
Haze_11065 Corylus avellana HOM05D009031 ORTHO05D000167 2.2e-06 56.2 93 29.0
Haze_20753 Corylus avellana HOM05D000003 ORTHO05D013566 2.2e-06 56.2 83 34.9
PSO063G1305 Papaver somniferum HOM05D003407 ORTHO05D001026 2.2e-06 56.2 122 29.5
Psat6g005280 Pisum sativum HOM05D017300 ORTHO05D000022 2.2e-06 56.2 134 27.6
QL04p069059 Quercus lobata HOM05D000003 ORTHO05D000167 2.2e-06 56.2 79 36.7
Atru.chr11.116 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-06 55.8 93 33.3
CANSAT11G0021 Cannabis sativa HOM05D000003 ORTHO05D000167 2.9e-06 55.8 101 36.6
Haze_08483 Corylus avellana HOM05D042742 ORTHO05D000167 2.9e-06 55.8 80 35.0
QL03p066006 Quercus lobata HOM05D001020 ORTHO05D014173 2.9e-06 55.8 79 36.7
Atru.chr2.570 Acer truncatum HOM05D000003 ORTHO05D000167 3.7e-06 55.5 141 24.1
Cfa015056 Carpinus fangiana HOM05D018234 ORTHO05D011454 3.7e-06 55.5 72 38.9
Haze_10464 Corylus avellana HOM05D000003 ORTHO05D000167 3.7e-06 55.5 83 31.3
Haze_12231 Corylus avellana HOM05D003181 ORTHO05D003689 3.7e-06 55.5 131 28.2
QL04p035197 Quercus lobata HOM05D000003 ORTHO05D036413 3.7e-06 55.5 132 31.1
QL06p048711 Quercus lobata HOM05D000027 ORTHO05D000066 3.7e-06 55.5 84 34.5
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 55.1 141 24.8
Atru.chr12.1749 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 55.1 112 25.9
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 55.1 131 26.0
CANSAT25G3211 Cannabis sativa HOM05D000003 ORTHO05D000167 4.9e-06 55.1 94 33.0
PSO210G1737 Papaver somniferum HOM05D000003 ORTHO05D000022 4.9e-06 55.1 86 36.0
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 4.9e-06 55.1 130 30.0
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 6.4e-06 54.7 143 27.3
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 6.4e-06 54.7 131 25.2
Atru.chr4.2213 Acer truncatum HOM05D000003 ORTHO05D000167 6.4e-06 54.7 108 28.7
CANSAT56G1970 Cannabis sativa HOM05D000003 ORTHO05D000167 6.4e-06 54.7 100 32.0
CANSAT64G1068 Cannabis sativa HOM05D000003 ORTHO05D000167 6.4e-06 54.7 116 31.0
CiPaw.07G085700 Carya illinoinensis HOM05D000003 ORTHO05D000004 6.4e-06 54.7 81 30.9
Haze_26067 Corylus avellana HOM05D009546 ORTHO05D013566 6.4e-06 54.7 91 33.0
Lj5g0017569 Lotus japonicus HOM05D000003 ORTHO05D007254 6.4e-06 54.7 135 28.9
PSO133G0054 Papaver somniferum HOM05D000003 ORTHO05D000004 6.4e-06 54.7 131 28.2
CANSAT01G1765 Cannabis sativa HOM05D000003 ORTHO05D000167 8.3e-06 54.3 146 28.1
AUR62034035 Chenopodium quinoa HOM05D000003 ORTHO05D000006 8.3e-06 54.3 99 30.3
Haze_16342 Corylus avellana HOM05D032658 ORTHO05D000167 8.3e-06 54.3 87 34.5
QL01p014938 Quercus lobata HOM05D000003 ORTHO05D000167 8.3e-06 54.3 81 34.6
TWI23G1168 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 8.3e-06 54.3 134 29.9
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 8.3e-06 54.3 138 26.1


User provided reference genes

Program Settings