Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 0.0e+00 1085.1 567 100.0
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 5.4e-248 860.9 571 78.5
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.3e-238 828.9 521 83.5
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 5.5e-232 807.7 568 74.8
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 7.9e-231 803.9 584 75.3
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 4.3e-229 798.1 566 73.7
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 5.7e-229 797.7 568 73.8
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 2.4e-227 792.3 565 74.3
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.2e-226 790.0 569 73.8
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.5e-226 789.6 564 73.6
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.3e-225 786.6 568 73.8
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 6.5e-225 784.3 565 71.9
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.6e-223 779.6 562 73.3
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.0e-222 776.9 566 71.4
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 1.4e-222 776.5 566 71.6
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 9.7e-221 770.4 566 71.9
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 3.7e-220 768.5 566 71.0
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 2.4e-219 765.8 566 71.2
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.1e-219 765.0 569 71.0
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 5.3e-219 764.6 565 72.9
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 6.9e-219 764.2 567 70.5
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.0e-218 762.7 569 70.8
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.4e-218 761.9 569 70.5
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.7e-218 760.8 574 70.7
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.9e-217 758.8 574 70.6
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 6.5e-217 757.7 571 70.2
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.4e-216 756.5 566 70.3
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.2e-216 755.4 569 70.1
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 3.2e-216 755.4 569 69.6
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 5.5e-216 754.6 567 71.4
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.6e-215 753.1 571 69.7
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.6e-215 753.1 571 70.8
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 2.7e-215 752.3 565 70.3
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 2.3e-214 749.2 571 69.5
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.5e-213 746.5 568 69.7
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.5e-213 746.5 566 70.1
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.7e-213 744.6 574 70.0
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 4.8e-212 741.5 565 68.3
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 9.1e-211 737.3 566 69.4
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 2.9e-209 732.3 584 68.5
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 6.5e-209 731.1 563 69.4
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 6.5e-209 731.1 605 66.3
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.2e-208 728.4 562 69.8
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 8.0e-207 724.2 570 67.0
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 8.0e-207 724.2 570 67.2
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 8.0e-207 724.2 571 67.4
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.0e-206 723.8 570 67.4
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.0e-206 723.8 561 69.5
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 3.0e-206 722.2 567 67.5
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 5.2e-206 721.5 573 66.5
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 6.7e-206 721.1 567 67.5
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 1.1e-205 720.3 570 67.4
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.0e-205 719.5 568 66.7
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 4.4e-205 718.4 569 67.7
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 9.7e-205 717.2 566 68.0
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.8e-204 715.7 500 73.0
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 3.7e-204 715.3 564 69.1
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.1e-203 713.8 568 67.1
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 2.4e-203 712.6 562 66.7
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 2.4e-203 712.6 562 66.7
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 7.0e-203 711.1 562 66.5
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 9.1e-203 710.7 564 67.4
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 2.6e-202 709.1 566 65.7
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 3.5e-202 708.8 567 66.0
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 3.5e-202 708.8 566 67.3
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 7.7e-202 707.6 503 73.0
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 2.9e-201 705.7 562 66.5
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 6.5e-201 704.5 562 66.4
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.5e-200 703.4 584 65.4
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.9e-200 703.0 591 65.3
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 7.2e-200 701.0 569 65.4
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 2.1e-199 699.5 571 64.1
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 3.6e-199 698.7 566 66.3
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 5.2e-198 694.9 568 66.9
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.2e-197 693.7 573 64.9
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 2.6e-197 692.6 569 65.6
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 4.8e-196 688.3 564 66.3
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 3.1e-195 685.6 600 64.3
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.2e-194 683.7 565 66.2
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 1.6e-194 683.3 570 64.0
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 2.9e-193 679.1 589 63.2
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 9.4e-192 674.1 571 64.3
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 9.4e-192 674.1 580 63.3
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.6e-191 673.3 569 64.5
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 9.8e-189 664.1 569 63.8
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 2.4e-187 659.4 602 60.8
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 3.1e-187 659.1 585 62.1
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 8.6e-185 651.0 654 58.6
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.4e-182 643.7 476 70.6
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 3.4e-181 639.0 480 70.2
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 6.3e-180 634.8 460 69.3
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.4e-179 633.6 573 61.4
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 3.2e-179 632.5 518 65.8
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 4.5e-178 628.6 486 67.9
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.7e-177 626.7 510 65.3
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 3.6e-175 619.0 576 59.7
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 3.2e-171 605.9 567 59.4
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 3.2e-171 605.9 552 63.0
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 6.2e-167 591.7 503 62.8
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.1e-160 570.9 569 59.4
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 2.5e-160 569.7 567 57.3
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 2.7e-154 549.7 535 54.8
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 8.6e-153 544.7 573 51.7
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.7e-148 530.4 349 77.1
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 4.9e-148 528.9 348 75.3
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.0e-145 521.2 516 53.7
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.5e-144 516.5 589 52.6
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.6e-143 513.8 474 58.6
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.9e-139 500.4 340 74.1
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 2.1e-138 496.9 403 66.5
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 7.4e-128 461.8 525 52.6
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 4.6e-122 442.6 363 64.7
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 4.6e-122 442.6 487 51.1
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 2.6e-117 426.8 242 87.6
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 2.6e-117 426.8 242 87.6
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 4.2e-115 419.5 415 59.0
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.6e-114 417.5 243 87.7
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 3.6e-106 389.8 396 56.6
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 2.3e-105 387.1 305 64.3
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.5e-104 383.6 234 81.2
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 3.1e-102 376.7 411 54.3
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.3e-100 371.3 283 66.4
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 3.2e-99 366.7 395 56.5
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 5.5e-99 365.9 414 53.6
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 7.0e-94 349.0 192 89.6
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 6.7e-89 332.4 331 53.8
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.3e-87 325.9 378 51.9
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 5.0e-84 316.2 578 37.4
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.3e-79 301.6 578 36.7
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 4.8e-79 299.7 159 89.9
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.2e-66 258.5 461 40.3
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 5.2e-65 253.1 143 86.7
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.4e-63 246.1 143 87.4
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.8e-62 244.6 180 73.3
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.6e-61 241.5 143 85.3
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 9.5e-59 232.3 134 87.3
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.0e-57 226.9 128 89.1
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 3.2e-54 217.2 244 53.7
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-50 203.4 556 31.7
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 5.1e-44 183.3 499 31.7
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.6e-36 156.0 88 87.5
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.1e-34 151.4 170 55.9
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.8e-33 146.4 92 79.3
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 4.6e-29 133.7 182 46.2
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 3.0e-28 131.0 205 42.9
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 2.6e-24 117.9 421 29.9
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.7e-23 115.2 132 50.8
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 3.5e-21 107.5 210 32.4
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.9e-21 106.3 122 52.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 1.3e-20 105.5 87 67.8
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 3.6e-18 97.4 258 30.2
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-17 95.1 52 90.4
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 1.1e-14 85.9 45 86.7
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 6.0e-13 80.1 315 28.9
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 6.5e-07 60.1 201 27.4
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 1.9e-06 58.5 32 93.8


User provided reference genes

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