Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 2.1e-99 365.9 218 100.0
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 6.9e-42 174.9 159 67.3
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 2.6e-41 172.9 159 67.9
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 9.7e-36 154.5 102 71.6
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 1.8e-34 150.2 102 68.6
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.8e-34 150.2 102 68.6
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.4e-34 149.8 102 68.6
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 2.6e-33 146.4 181 45.3
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 5.9e-33 145.2 102 68.6
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 2.2e-32 143.3 220 44.1
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 2.9e-32 142.9 99 67.7
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 1.1e-31 141.0 99 65.7
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.9e-31 140.2 210 42.9
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 5.5e-31 138.7 95 70.5
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 2.7e-30 136.3 100 66.0
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 4.6e-30 135.6 219 46.6
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 6.1e-30 135.2 102 66.7
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 7.9e-30 134.8 95 68.4
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 2.3e-29 133.3 102 65.7
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 2.3e-29 133.3 99 62.6
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 2.3e-29 133.3 94 66.0
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 2.3e-29 133.3 99 65.7
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 3.9e-29 132.5 94 67.0
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 6.7e-29 131.7 98 64.3
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 6.7e-29 131.7 95 68.4
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 1.1e-28 131.0 95 65.3
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 3.3e-28 129.4 219 42.9
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 5.7e-28 128.6 106 63.2
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 2.2e-27 126.7 96 64.6
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 2.2e-27 126.7 99 62.6
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 2.2e-27 126.7 105 57.1
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 2.8e-27 126.3 224 43.3
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 4.8e-27 125.6 101 61.4
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 6.3e-27 125.2 95 62.1
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 1.1e-26 124.4 104 56.7
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 1.1e-26 124.4 148 47.3
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 1.4e-26 124.0 97 59.8
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 1.4e-26 124.0 102 59.8
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 1.8e-26 123.6 105 55.2
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 3.1e-26 122.9 97 60.8
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 6.9e-26 121.7 94 63.8
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 6.9e-26 121.7 91 59.3
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 9.1e-26 121.3 102 58.8
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 1.2e-25 120.9 101 59.4
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 2.0e-25 120.2 102 57.8
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 2.0e-25 120.2 107 57.9
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 3.4e-25 119.4 109 58.7
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 4.5e-25 119.0 100 55.0
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 5.9e-25 118.6 103 57.3
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 7.7e-25 118.2 105 56.2
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 7.7e-25 118.2 105 56.2
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 1.7e-24 117.1 95 61.1
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 2.2e-24 116.7 108 54.6
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 2.9e-24 116.3 103 56.3
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 2.9e-24 116.3 102 55.9
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 2.9e-24 116.3 94 59.6
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 3.8e-24 115.9 97 56.7
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 3.8e-24 115.9 95 61.1
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 5.0e-24 115.5 91 58.2
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 6.5e-24 115.2 108 52.8
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 6.5e-24 115.2 96 55.2
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 8.5e-24 114.8 131 51.1
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 8.5e-24 114.8 96 55.2
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 3.2e-23 112.8 100 52.0
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 9.4e-23 111.3 218 37.6
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 9.4e-23 111.3 160 41.9
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 1.6e-22 110.5 103 55.3
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 1.6e-22 110.5 103 55.3
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 1.6e-22 110.5 103 55.3
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 1.6e-22 110.5 222 37.4
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 2.1e-22 110.2 218 36.7
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 4.7e-22 109.0 224 38.8
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 4.7e-22 109.0 97 49.5
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 8.8e-21 104.8 218 36.2
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 8.8e-21 104.8 218 36.2
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 8.8e-21 104.8 93 52.7
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 8.8e-21 104.8 136 41.9
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 2.0e-20 103.6 99 52.5
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 2.6e-20 103.2 132 43.9
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 3.3e-20 102.8 91 54.9
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 3.3e-20 102.8 214 34.1
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 7.4e-20 101.7 222 35.1
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 9.7e-20 101.3 86 53.5
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 1.3e-19 100.9 219 34.7
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 2.2e-19 100.1 100 50.0
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 4.8e-19 99.0 203 35.0
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 4.8e-19 99.0 104 46.2
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 1.8e-18 97.1 104 47.1
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 7.0e-18 95.1 83 59.0
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 1.2e-17 94.4 65 63.1
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 1.6e-17 94.0 158 39.2
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 1.6e-17 94.0 89 52.8
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 2.6e-17 93.2 192 35.9
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 2.2e-16 90.1 201 44.8
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 2.2e-16 90.1 89 51.7
Haze_23872 Corylus avellana HOM05D007207 ORTHO05D009041 8.5e-16 88.2 156 44.9
AUR62024995 Chenopodium quinoa HOM05D007207 ORTHO05D009041 1.9e-15 87.0 67 67.2
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 2.5e-15 86.7 71 59.2
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 2.7e-14 83.2 65 55.4
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 4.4e-12 75.9 68 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 1.7e-11 73.9 87 41.4
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 1.7e-11 73.9 67 49.3
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 1.4e-10 70.9 93 39.8
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 9.1e-10 68.2 61 50.8
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 2.0e-09 67.0 85 40.0
Mapoly0168s0007 Marchantia polymorpha HOM05D007207 ORTHO05D009041 7.7e-09 65.1 91 36.3
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 1.0e-08 64.7 181 31.5
Zm00001eb064730 Zea mays HOM05D007207 ORTHO05D009041 6.5e-08 62.0 94 35.1
Solyc03g111450.3 Solanum lycopersicum HOM05D000789 ORTHO05D002065 8.5e-08 61.6 90 34.4
Sopen03g030560 Solanum pennellii HOM05D000002 ORTHO05D002065 1.5e-07 60.8 90 33.3
PGSC0003DMG400015177 Solanum tuberosum HOM05D000789 ORTHO05D000897 2.5e-07 60.1 89 34.8
Oeu011060.1 Olea europaea HOM05D000789 ORTHO05D009723 3.6e-06 56.2 88 33.0
AL8G24720 Arabidopsis lyrata HOM05D000789 ORTHO05D038648 4.7e-06 55.8 87 33.3
arahy.Tifrunner.gnm1.ann1.FIIU1N Arachis hypogaea HOM05D000789 ORTHO05D000897 6.1e-06 55.5 89 29.2
CSS0017630 Camellia sinensis var. sinensis HOM05D000789 ORTHO05D000897 6.1e-06 55.5 95 28.4
CSS0034209 Camellia sinensis var. sinensis HOM05D000789 ORTHO05D000897 6.1e-06 55.5 95 28.4
Lj6P574T30 Lonicera japonica HOM05D000789 ORTHO05D000897 6.1e-06 55.5 99 28.3
AUR62038058 Chenopodium quinoa HOM05D000789 ORTHO05D000897 8.0e-06 55.1 91 28.6
Gohir.1Z049609 Gossypium hirsutum HOM05D000789 ORTHO05D000897 8.0e-06 55.1 100 30.0
Gohir.A07G050801 Gossypium hirsutum HOM05D000789 ORTHO05D000897 8.0e-06 55.1 100 30.0


User provided reference genes

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