Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 7.7e-49 196.8 99 100.0
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 5.7e-28 127.5 101 70.3
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 4.1e-26 121.3 103 69.9
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 3.5e-25 118.2 100 67.0
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 3.5e-25 118.2 101 68.3
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 1.5e-23 112.8 100 64.0
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 2.5e-23 112.1 100 64.0
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 9.5e-23 110.2 102 65.7
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 2.0e-20 102.4 101 61.4
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 3.4e-20 101.7 102 60.8
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 3.4e-20 101.7 99 61.6
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 5.8e-20 100.9 102 59.8
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.7e-19 99.4 102 59.8
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 2.2e-19 99.0 102 59.8
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 6.4e-19 97.4 100 57.0
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 6.4e-19 97.4 101 61.4
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 1.4e-18 96.3 100 57.0
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 5.4e-18 94.4 100 55.0
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 5.4e-18 94.4 100 58.0
Aqoxy1G00528 Aquilegia oxysepala HOM05D007887 ORTHO05D009725 7.0e-18 94.0 101 55.4
GSVIVG01025148001 Vitis vinifera HOM05D007887 ORTHO05D009725 1.2e-17 93.2 99 58.6
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 1.3e-16 89.7 105 55.2
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 9.5e-15 83.6 101 51.5
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 9.5e-15 83.6 101 51.5
Prupe.6G096000 Prunus persica HOM05D007887 ORTHO05D009725 9.5e-15 83.6 78 60.3
Glyma.12G071500 Glycine max HOM05D007887 ORTHO05D009725 1.6e-14 82.8 100 54.0
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 2.1e-14 82.4 101 50.5
C02p11720 Brassica napus HOM05D007887 ORTHO05D009725 4.7e-14 81.3 101 50.5
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 2.3e-13 79.0 91 50.5
BraA02t05732Z Brassica rapa HOM05D007887 ORTHO05D009725 3.1e-13 78.6 103 50.5
CANSAT54G2812 Cannabis sativa HOM05D007887 ORTHO05D009725 4.0e-13 78.2 101 51.5
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 5.2e-13 77.8 101 48.5
TPR.G36408 Trifolium pratense HOM05D007887 ORTHO05D009725 5.2e-13 77.8 100 49.0
BolC3t13748H Brassica oleracea HOM05D007887 ORTHO05D009725 6.8e-13 77.4 91 49.5
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 8.9e-13 77.0 97 49.5
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 1.2e-12 76.6 89 48.3
BcaB05g22638 Brassica carinata HOM05D007887 ORTHO05D009725 1.5e-12 76.3 102 50.0
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 2.0e-12 75.9 93 47.3
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 3.4e-12 75.1 105 47.6
Psat7g222640 Pisum sativum HOM05D007887 ORTHO05D009725 4.4e-12 74.7 107 47.7
Lalb_Chr03g0027141 Lupinus albus HOM05D007887 ORTHO05D009725 2.9e-11 72.0 100 48.0
Sp6g21990 Schrenkiella parvula HOM05D007887 ORTHO05D009725 8.3e-11 70.5 97 46.4
Lj3g0011826 Lotus japonicus HOM05D007887 ORTHO05D009725 1.1e-10 70.1 102 49.0
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 1.4e-10 69.7 96 46.9
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 1.4e-10 69.7 96 46.9
A10p17620 Brassica napus HOM05D007887 ORTHO05D009725 2.4e-10 68.9 96 45.8
BraA10t43842Z Brassica rapa HOM05D007887 ORTHO05D009725 2.4e-10 68.9 96 45.8
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 2.4e-10 68.9 104 48.1
Gohir.A13G220700 Gossypium hirsutum HOM05D037992 ORTHO05D009725 3.2e-10 68.6 105 47.6
COL.COLO4_05193 Corchorus olitorius HOM05D007887 ORTHO05D009725 4.1e-10 68.2 71 59.2
BcaB08g36339 Brassica carinata HOM05D007887 ORTHO05D009725 5.4e-10 67.8 96 46.9
Thhalv10015113m.g Eutrema salsugineum HOM05D007887 ORTHO05D009725 5.4e-10 67.8 93 48.4
BolC9t58177H Brassica oleracea HOM05D007887 ORTHO05D009725 7.1e-10 67.4 96 45.8
BcaB01g04657 Brassica carinata HOM05D007887 ORTHO05D009725 3.5e-09 65.1 94 46.8
Lj3g0000190 Lotus japonicus HOM05D007887 ORTHO05D009725 3.5e-09 65.1 109 47.7
Phvul.011G072900 Phaseolus vulgaris HOM05D007887 ORTHO05D009725 4.6e-09 64.7 101 45.5
arahy.Tifrunner.gnm1.ann1.ZKT7Q5 Arachis hypogaea HOM05D007887 ORTHO05D009725 6.0e-09 64.3 62 58.1
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 6.0e-09 64.3 87 50.6
Ca_01431_v3 Cicer arietinum L. HOM05D007887 ORTHO05D009725 1.3e-08 63.2 97 46.4
arahy.Tifrunner.gnm1.ann1.VU6S4B Arachis hypogaea HOM05D007887 ORTHO05D009725 1.7e-08 62.8 62 58.1
Glyma.13G328200 Glycine max HOM05D007887 ORTHO05D009725 2.3e-08 62.4 101 41.6
QL01p037342 Quercus lobata HOM05D000003 ORTHO05D011877 2.3e-08 62.4 47 68.1
arahy.Tifrunner.gnm1.ann1.5EA918 Arachis hypogaea HOM05D007887 ORTHO05D009725 3.0e-08 62.0 62 56.5
TPR.G11627 Trifolium pratense HOM05D007887 ORTHO05D009725 3.0e-08 62.0 90 46.7
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 3.9e-08 61.6 91 42.9
Rhsim13G0092900 Rhododendron simsii HOM05D007887 ORTHO05D009725 3.9e-08 61.6 79 49.4
Eucgr.J00947 Eucalyptus grandis HOM05D007887 ORTHO05D009725 5.1e-08 61.2 108 43.5
Sopen11g027840 Solanum pennellii HOM05D023935 ORTHO05D009725 6.6e-08 60.8 99 40.4
Ciclev10029602m.g Citrus clementina HOM05D007887 ORTHO05D009725 1.5e-07 59.7 120 41.7
Peaxi162Scf00351g00317 Petunia axillaris HOM05D023935 ORTHO05D009725 1.5e-07 59.7 99 40.4
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 1.9e-07 59.3 91 44.0
arahy.Tifrunner.gnm1.ann1.QG78WL Arachis hypogaea HOM05D007887 ORTHO05D009725 1.9e-07 59.3 62 54.8
Sc06g0010490 Simmondsia chinensis HOM05D007887 ORTHO05D009725 2.5e-07 58.9 91 46.2
PGSC0003DMG400008069 Solanum tuberosum HOM05D023935 ORTHO05D009725 2.5e-07 58.9 99 40.4
AL8G37010 Arabidopsis lyrata HOM05D007887 ORTHO05D009725 4.3e-07 58.2 92 45.7
BolC2t07271H Brassica oleracea HOM05D007887 ORTHO05D009725 9.5e-07 57.0 100 41.0
Aa31LG1G12450 Aethionema arabicum HOM05D007887 ORTHO05D009725 1.6e-06 56.2 91 42.9
Solyc11g069115.1 Solanum lycopersicum HOM05D023935 ORTHO05D009725 1.6e-06 56.2 99 37.4
Solyc11g069110.2 Solanum lycopersicum HOM05D023935 ORTHO05D009725 2.8e-06 55.5 99 37.4
CDE09G0302 Ceratophyllum demersum HOM05D041108 ORTHO05D009725 3.6e-06 55.1 36 75.0
ClCG02G021000 Citrullus lanatus HOM05D031230 ORTHO05D028893 8.1e-06 53.9 92 44.6


User provided reference genes

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