Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 7.7e-163 577.0 279 100.0
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 3.3e-129 465.3 267 82.0
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 3.4e-118 428.7 264 76.1
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 4.2e-116 421.8 268 75.0
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 9.3e-116 420.6 271 73.4
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.9e-113 412.9 265 72.5
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 6.4e-109 397.9 276 68.5
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 2.7e-107 392.5 278 66.9
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 3.0e-106 389.0 279 67.7
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.5e-105 386.7 259 71.4
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.5e-105 386.7 279 65.9
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.9e-105 386.3 197 95.9
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 1.9e-105 386.3 260 69.2
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 5.6e-105 384.8 279 65.9
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 2.1e-104 382.9 273 65.9
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 2.8e-104 382.5 268 66.8
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 2.8e-104 382.5 275 65.5
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 3.6e-104 382.1 270 65.6
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 3.6e-104 382.1 267 68.2
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 3.1e-103 379.0 266 64.3
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.1e-103 379.0 272 65.8
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 4.0e-103 378.6 263 68.4
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 4.0e-103 378.6 279 65.9
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 4.0e-103 378.6 259 68.3
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 5.3e-103 378.3 270 65.9
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.6e-102 375.9 264 66.3
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 5.8e-102 374.8 259 67.2
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 9.9e-102 374.0 275 64.7
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.3e-101 373.6 279 64.5
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 2.2e-101 372.9 280 66.4
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 4.9e-101 371.7 267 66.7
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.9e-101 371.7 278 64.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 4.9e-101 371.7 278 64.7
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.9e-100 369.8 274 64.6
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 2.4e-100 369.4 259 66.0
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 4.2e-100 368.6 259 66.0
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 7.1e-100 367.9 273 64.1
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.7e-99 365.9 274 64.2
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 3.5e-99 365.5 275 62.2
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 6.0e-99 364.8 279 62.7
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.8e-98 363.2 286 63.6
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 6.7e-98 361.3 277 59.9
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 6.7e-98 361.3 273 63.4
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.5e-97 359.4 261 64.8
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 3.3e-97 359.0 265 61.5
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 4.3e-97 358.6 276 63.8
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 1.3e-96 357.1 270 66.7
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 2.1e-96 356.3 274 63.1
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 6.2e-96 354.8 256 64.1
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 1.5e-94 350.1 269 62.1
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 5.8e-94 348.2 279 60.6
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.0e-93 347.4 311 57.6
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 6.5e-93 344.7 283 61.1
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 4.2e-92 342.0 238 64.7
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 7.1e-92 341.3 288 57.6
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 2.7e-91 339.3 261 61.7
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 6.0e-91 338.2 261 61.3
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 1.0e-90 337.4 276 60.5
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 3.0e-90 335.9 259 62.9
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 3.9e-90 335.5 278 61.5
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.1e-90 335.1 240 66.7
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 5.1e-90 335.1 279 57.7
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.5e-89 333.6 267 58.1
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 2.5e-89 332.8 265 58.5
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 2.1e-88 329.7 278 58.3
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 3.7e-88 328.9 290 56.2
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 2.4e-87 326.2 275 57.8
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 4.1e-87 325.5 260 62.3
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.2e-86 323.9 259 61.0
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.7e-85 320.1 269 58.7
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 2.2e-85 319.7 259 57.5
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.4e-84 317.0 272 55.9
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.9e-84 316.6 218 67.9
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 9.3e-84 314.3 272 55.9
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 6.1e-83 311.6 279 54.8
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.0e-82 310.8 271 55.7
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.0e-82 310.8 278 55.8
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 1.3e-82 310.5 279 55.6
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.3e-82 310.5 279 55.6
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.8e-82 310.1 257 56.8
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 1.8e-82 310.1 279 55.2
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 3.9e-82 308.9 279 53.8
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.6e-80 303.5 278 56.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.8e-80 302.8 279 52.7
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 2.8e-80 302.8 279 53.8
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 6.3e-80 301.6 258 52.7
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.2e-80 301.2 238 60.9
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 3.1e-79 299.3 206 68.9
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.2e-78 297.4 270 53.0
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.0e-78 296.6 272 54.4
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.6e-78 296.2 271 53.5
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 3.4e-78 295.8 259 51.4
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 7.7e-78 294.7 238 54.6
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 1.0e-77 294.3 250 56.4
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 2.2e-77 293.1 226 64.2
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 2.9e-77 292.7 197 70.1
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 5.5e-76 288.5 273 52.4
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.6e-75 287.0 198 67.7
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 2.7e-75 286.2 281 50.2
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 3.6e-75 285.8 272 56.2
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 6.1e-75 285.0 251 53.4
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 3.0e-74 282.7 251 53.4
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 3.3e-73 279.3 254 54.3
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 5.7e-73 278.5 253 54.2
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 4.8e-72 275.4 266 50.4
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.2e-70 270.8 261 49.8
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 3.4e-70 269.2 267 49.8
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 4.5e-70 268.9 198 63.6
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 1.3e-69 267.3 269 50.6
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 6.5e-69 265.0 248 54.0
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.0e-66 257.7 261 49.8
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 4.4e-65 252.3 258 48.1
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 5.7e-65 251.9 280 47.9
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.4e-63 247.3 266 48.5
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 2.2e-61 240.0 190 60.5
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 4.2e-60 235.7 179 58.7
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.4e-58 230.7 170 65.3
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-57 227.6 277 46.9
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 1.8e-55 220.3 260 42.7
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-49 201.1 152 61.2
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 2.0e-46 190.3 169 57.4
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 7.8e-38 161.8 116 63.8
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 2.3e-37 160.2 116 62.9
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 5.6e-36 155.6 116 62.1
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-35 154.5 120 62.5
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 7.5e-33 145.2 131 50.4
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 9.8e-33 144.8 112 63.4
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.9e-32 143.3 145 50.3
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 9.5e-28 128.3 108 52.8
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.8e-27 126.7 101 55.4
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.1e-26 124.8 85 63.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 8.9e-26 121.7 108 54.6
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.0e-25 120.6 100 52.0
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.6e-25 120.2 103 59.2
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.3e-20 102.8 89 55.1
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 2.8e-19 100.1 85 45.9
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.2e-15 86.7 70 64.3
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 3.4e-09 66.6 42 73.8
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.2e-07 58.5 43 62.8


User provided reference genes

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