Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.3e-199 698.7 358 100.0
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.6e-160 569.7 378 81.2
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 3.9e-127 458.8 353 67.4
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 1.1e-124 450.7 346 65.9
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 3.4e-123 445.7 346 65.3
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 6.5e-122 441.4 351 67.0
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 2.1e-120 436.4 350 65.1
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 1.0e-119 434.1 351 66.1
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 4.4e-118 428.7 347 64.6
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.8e-117 425.2 348 63.2
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 6.3e-117 424.9 348 63.2
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.8e-116 423.3 347 63.7
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 4.5e-115 418.7 362 60.2
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 5.9e-115 418.3 347 62.5
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 1.7e-114 416.8 355 62.0
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.7e-114 416.8 349 60.5
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.9e-114 416.0 347 62.5
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.9e-113 413.3 346 61.0
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 1.9e-113 413.3 362 61.0
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 2.7e-112 409.5 351 62.4
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.8e-111 406.8 348 61.5
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 4.0e-111 405.6 346 60.1
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.2e-110 404.1 349 59.9
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.3e-109 400.6 376 58.2
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 1.4e-108 397.1 355 59.4
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 4.1e-108 395.6 351 58.7
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 1.2e-107 394.0 352 58.5
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 2.7e-107 392.9 352 58.2
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.0e-106 391.0 352 58.0
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 2.2e-106 389.8 346 58.7
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.5e-105 387.1 346 59.0
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 3.2e-105 386.0 346 58.1
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 3.2e-105 386.0 354 56.5
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 4.7e-104 382.1 356 56.7
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.7e-104 382.1 346 56.4
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 4.7e-104 382.1 350 57.1
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.4e-103 380.6 348 56.3
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.8e-103 380.2 355 56.1
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 2.3e-103 379.8 351 56.7
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 2.3e-103 379.8 323 60.4
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 1.2e-102 377.5 346 55.5
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 4.4e-102 375.6 359 54.9
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.3e-101 374.0 329 58.7
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 6.3e-101 371.7 354 53.7
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 1.4e-100 370.5 343 56.6
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 3.1e-100 369.4 351 55.6
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 7.0e-100 368.2 379 52.8
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 9.1e-100 367.9 352 53.4
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.1e-97 360.9 354 54.0
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.2e-97 359.0 302 62.9
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 4.2e-97 359.0 329 60.5
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 5.5e-97 358.6 350 57.1
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 8.0e-96 354.8 351 53.8
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.4e-95 354.0 359 54.3
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 2.3e-95 353.2 343 57.4
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 4.0e-95 352.4 366 50.8
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 6.8e-95 351.7 274 61.3
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 6.8e-95 351.7 350 54.9
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 3.4e-94 349.4 320 59.1
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 3.4e-94 349.4 354 52.5
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 4.9e-93 345.5 339 52.2
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 8.3e-93 344.7 346 55.8
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 4.1e-92 342.4 276 64.1
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 5.4e-92 342.0 376 51.6
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 3.5e-91 339.3 351 51.0
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.7e-90 337.0 348 51.4
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 2.3e-90 336.7 252 65.9
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 6.6e-90 335.1 347 50.7
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 6.6e-90 335.1 279 64.2
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.5e-89 333.2 240 66.7
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.5e-89 333.2 344 53.5
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 9.5e-89 331.3 343 51.0
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.8e-88 329.7 341 53.4
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 6.1e-88 328.6 371 48.2
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 6.1e-88 328.6 370 48.1
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 3.0e-87 326.2 349 51.0
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 5.2e-87 325.5 349 51.3
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 5.2e-87 325.5 358 51.1
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 8.9e-87 324.7 347 51.0
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 4.4e-86 322.4 351 49.6
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 4.4e-86 322.4 351 50.4
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 7.5e-86 321.6 352 49.7
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 2.4e-84 316.6 348 49.4
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 2.4e-84 316.6 348 50.6
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.2e-83 314.3 366 47.8
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 6.0e-83 312.0 348 48.9
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.3e-82 310.8 381 45.7
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 1.7e-82 310.5 348 48.6
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 3.9e-82 309.3 348 48.9
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 5.0e-82 308.9 344 48.5
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.6e-81 305.4 340 47.6
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 7.3e-81 305.1 374 45.2
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 2.8e-80 303.1 346 48.3
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.4e-79 300.8 377 46.7
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 4.0e-79 299.3 343 48.4
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 1.3e-77 294.3 341 46.3
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 9.2e-76 288.1 343 46.9
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.6e-75 287.3 341 44.6
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 2.1e-75 287.0 212 62.3
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.0e-74 284.6 330 45.5
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 7.3e-73 278.5 354 47.5
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 6.2e-72 275.4 346 46.8
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 2.2e-69 266.9 368 42.4
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.9e-69 265.8 344 45.3
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.9e-68 263.8 238 54.2
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 4.1e-68 262.7 363 42.7
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 5.4e-68 262.3 251 52.6
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-67 260.8 251 52.6
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 7.3e-65 251.9 275 51.6
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 9.5e-65 251.5 257 49.0
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.6e-64 250.8 272 47.4
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.4e-63 247.7 350 45.1
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.5e-62 244.2 332 43.7
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 2.9e-61 240.0 344 41.3
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.1e-60 238.0 268 44.4
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 4.3e-57 226.1 171 64.3
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 4.3e-57 226.1 234 56.4
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 8.1e-56 221.9 163 62.6
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 4.0e-55 219.5 159 64.2
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 5.8e-54 215.7 272 41.9
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.8e-46 189.1 162 55.6
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 2.1e-40 170.6 210 50.5
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 3.7e-40 169.9 226 44.2
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.0e-39 166.4 216 48.6
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 4.2e-36 156.4 114 61.4
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 7.4e-33 145.6 110 63.6
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.0e-26 125.2 102 57.8
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 4.3e-25 119.8 102 53.9
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 4.3e-25 119.8 79 65.8
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 7.4e-25 119.0 110 61.8
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 4.8e-24 116.3 79 64.6
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 8.2e-24 115.5 79 63.3
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 6.5e-21 105.9 90 58.9
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 6.1e-19 99.4 77 63.6
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 8.8e-18 95.5 148 46.6
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.4e-15 88.2 98 42.9
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.4e-15 88.2 98 42.9
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 4.1e-15 86.7 75 52.0
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 8.8e-10 68.9 113 49.6
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 5.7e-09 66.2 42 71.4
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 7.4e-09 65.9 63 44.4
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 7.0e-07 59.3 42 64.3


User provided reference genes

Program Settings