Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 5.3e-87 324.3 165 100.0
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 4.5e-70 268.1 164 79.3
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.0e-69 266.9 165 80.6
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 1.3e-69 266.5 165 80.6
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 1.6e-59 233.0 168 67.9
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 2.3e-58 229.2 163 68.7
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 8.9e-58 227.3 160 69.4
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.5e-57 226.5 163 68.1
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 2.0e-57 226.1 160 66.9
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 2.0e-57 226.1 159 69.2
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.4e-55 219.9 158 69.0
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 2.4e-55 219.2 164 64.0
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 2.4e-55 219.2 165 64.8
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 2.4e-55 219.2 158 69.6
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 2.4e-55 219.2 168 64.9
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 9.2e-55 217.2 165 66.1
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 1.6e-54 216.5 160 65.6
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 3.5e-54 215.3 151 66.9
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 4.6e-54 214.9 165 65.5
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 4.6e-54 214.9 158 65.8
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.0e-53 213.8 161 65.2
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 1.3e-53 213.4 163 63.2
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 1.7e-53 213.0 166 63.9
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 1.7e-53 213.0 140 69.3
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 1.7e-53 213.0 163 63.2
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 3.0e-53 212.2 163 62.6
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 6.6e-53 211.1 159 64.2
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 5.6e-52 208.0 161 64.0
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 1.2e-51 206.8 148 66.2
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 1.6e-51 206.5 142 70.4
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 1.6e-51 206.5 162 60.5
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 1.6e-51 206.5 163 62.6
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 2.1e-51 206.1 163 63.2
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 2.8e-51 205.7 159 62.9
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 2.8e-51 205.7 163 62.0
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 4.7e-51 204.9 157 63.7
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 8.1e-51 204.1 159 63.5
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 1.1e-50 203.8 156 65.4
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.1e-50 203.8 156 63.5
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 1.4e-50 203.4 134 68.7
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 1.4e-50 203.4 158 64.6
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.3e-50 202.6 156 64.7
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 3.1e-50 202.2 166 60.2
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 4.0e-50 201.8 156 63.5
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 5.2e-50 201.4 158 60.8
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 6.8e-50 201.1 156 65.4
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 1.2e-49 200.3 163 59.5
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 1.2e-49 200.3 156 62.8
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 1.5e-49 199.9 156 62.8
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 4.4e-49 198.4 157 62.4
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 4.4e-49 198.4 166 59.0
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 5.8e-49 198.0 157 62.4
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 5.8e-49 198.0 158 63.3
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 7.5e-49 197.6 142 66.9
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.3e-48 196.8 158 59.5
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 2.2e-48 196.1 148 62.8
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 4.9e-48 194.9 144 65.3
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 1.1e-47 193.7 156 60.3
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.4e-47 193.4 156 62.2
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 2.4e-47 192.6 157 61.1
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 3.2e-47 192.2 156 60.9
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 3.2e-47 192.2 157 59.9
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 4.1e-47 191.8 160 57.5
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 7.1e-47 191.0 152 59.2
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 7.1e-47 191.0 141 61.7
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 1.2e-46 190.3 141 61.0
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 1.6e-46 189.9 156 55.1
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 1.6e-46 189.9 148 64.9
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 2.1e-46 189.5 164 54.9
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 3.5e-46 188.7 157 58.0
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 3.5e-46 188.7 146 63.0
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 3.5e-46 188.7 160 58.1
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 4.6e-46 188.3 141 60.3
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.0e-45 187.2 161 58.4
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.7e-45 186.4 161 56.5
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 2.3e-45 186.0 155 54.8
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 3.9e-45 185.3 141 60.3
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 3.9e-45 185.3 162 59.3
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 5.1e-45 184.9 157 56.7
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 8.6e-45 184.1 142 62.7
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 8.6e-45 184.1 165 55.2
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 1.1e-44 183.7 137 63.5
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 1.5e-44 183.3 155 53.5
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 1.9e-44 183.0 140 60.7
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.3e-44 182.2 154 61.0
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 3.3e-44 182.2 152 56.6
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 5.6e-44 181.4 160 56.2
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 5.6e-44 181.4 155 58.1
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 7.3e-44 181.0 153 54.9
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 7.3e-44 181.0 156 55.8
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 1.2e-43 180.3 139 61.2
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 2.1e-43 179.5 156 51.9
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 1.1e-42 177.2 137 59.9
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.0e-42 175.3 115 73.0
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 5.2e-42 174.9 153 58.2
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 1.5e-41 173.3 143 55.2
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 2.6e-41 172.6 136 59.6
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 2.6e-41 172.6 138 61.6
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 2.6e-41 172.6 155 54.2
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 3.4e-41 172.2 125 66.4
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 4.9e-40 168.3 159 50.9
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 7.1e-39 164.5 136 55.1
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 1.0e-37 160.6 155 54.8
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 1.3e-37 160.2 128 59.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 2.5e-36 156.0 137 52.6
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.2e-35 153.7 111 64.0
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.0e-34 148.7 161 49.1
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 1.2e-33 147.1 112 61.6
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 1.3e-32 143.7 113 57.5
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 1.2e-30 137.1 152 46.1
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 6.6e-29 131.3 144 50.0
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 8.7e-29 131.0 150 44.7
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 1.6e-27 126.7 138 39.9
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 5.3e-26 121.7 141 46.8
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 6.9e-26 121.3 131 45.8
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 4.5e-25 118.6 76 72.4
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 2.9e-24 115.9 153 41.8
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 4.9e-24 115.2 77 66.2
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 1.0e-21 107.5 75 66.7
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 8.7e-21 104.4 105 47.6
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.9e-20 103.2 142 38.0
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 6.2e-19 98.2 89 59.6
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 5.3e-18 95.1 126 41.3
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 1.4e-15 87.0 144 32.6
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.9e-15 86.7 152 36.2
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 5.5e-15 85.1 68 61.8
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 2.1e-14 83.2 64 60.9
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 2.5e-12 76.3 104 42.3
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 3.7e-11 72.4 76 46.1
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 3.8e-08 62.4 41 63.4


User provided reference genes

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