Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 0.0e+00 2840.1 1486 100.0
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 0.0e+00 1305.8 1646 51.4
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 0.0e+00 1253.8 1469 53.4
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 0.0e+00 1231.1 1792 45.9
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 2.3e-165 587.8 1615 34.6
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 1.1e-151 542.3 1591 33.4
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 1.2e-150 538.9 1489 33.8
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 1.7e-147 528.5 1601 32.5
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 1.9e-130 471.9 1521 32.1
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 5.4e-130 470.3 1522 32.9
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 1.4e-125 455.7 1715 30.1
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.2e-121 442.6 1513 31.4
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 1.5e-116 425.6 1470 30.4
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 1.8e-112 412.1 1528 30.8
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 8.1e-110 403.3 1525 30.8
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 1.1e-109 402.9 1437 30.5
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 5.8e-108 397.1 1495 30.2
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.9e-107 394.8 1493 29.6
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 1.2e-105 389.4 1436 29.8
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 6.0e-105 387.1 1531 30.0
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 7.4e-103 380.2 1469 30.4
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.4e-93 349.4 1411 29.1
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 5.0e-91 340.9 843 35.6
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 6.5e-91 340.5 1440 29.8
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 7.9e-81 307.0 1477 26.7
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.0e-80 306.6 1502 27.0
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 1.6e-76 292.7 1532 27.7
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 6.5e-75 287.3 1466 27.9
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 2.6e-71 275.4 1535 26.8
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 1.3e-70 273.1 1633 26.8
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 7.7e-68 263.8 1515 26.5
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 4.2e-66 258.1 1165 30.2
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.2e-65 256.5 1502 26.5
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 6.1e-65 254.2 492 39.4
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 2.3e-64 252.3 753 32.5
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 2.2e-62 245.7 646 35.0
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 1.4e-61 243.0 689 35.1
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 1.6e-60 239.6 1022 29.4
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 1.0e-59 236.9 537 37.2
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 1.0e-59 236.9 1169 27.7
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 1.3e-59 236.5 1469 26.9
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 8.5e-59 233.8 503 37.4
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 8.5e-59 233.8 1537 25.8
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 8.5e-59 233.8 1516 25.1
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 1.1e-58 233.4 1677 26.1
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 1.6e-57 229.6 1539 27.4
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 8.0e-57 227.3 1504 26.1
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 7.5e-55 220.7 1537 27.6
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 1.7e-54 219.5 589 33.4
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 4.9e-54 218.0 1095 26.4
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 5.9e-52 211.1 1520 24.5
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 7.8e-52 210.7 1616 26.2
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 2.3e-51 209.1 1113 27.9
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 5.0e-51 208.0 1482 25.7
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 1.2e-44 186.8 464 34.7
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 4.6e-44 184.9 529 31.8
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 6.6e-43 181.0 1510 24.4
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 1.6e-41 176.4 250 46.8
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 2.3e-40 172.6 245 48.2
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 2.9e-38 165.6 963 27.2
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 1.4e-37 163.3 1276 24.7
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 1.4e-37 163.3 498 32.9
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 9.2e-37 160.6 416 34.4
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 9.2e-37 160.6 505 33.1
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 1.6e-36 159.8 413 35.8
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 3.0e-35 155.6 459 32.5
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 1.5e-34 153.3 565 30.8
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 2.5e-34 152.5 489 29.7
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 5.6e-34 151.4 1154 23.9
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 8.1e-33 147.5 513 31.2
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 8.1e-33 147.5 513 31.2
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.2e-31 143.7 473 31.5
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 2.2e-30 139.4 1515 23.1
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 2.9e-30 139.0 1397 24.3
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.1e-29 137.1 452 32.1
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 9.2e-29 134.0 253 41.5
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 3.5e-28 132.1 388 34.5
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 1.3e-27 130.2 489 29.2
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 1.9e-26 126.3 176 46.0
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 2.5e-26 125.9 479 28.2
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 1.2e-25 123.6 213 39.0
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.6e-25 123.2 641 29.0
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 5.2e-24 118.2 164 44.5
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 8.9e-24 117.5 250 35.6
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 2.2e-22 112.8 598 26.8
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 6.4e-22 111.3 95 60.0
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 6.4e-22 111.3 205 38.0
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-21 109.4 199 37.7
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 3.2e-21 109.0 182 42.3
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.2e-20 107.1 750 26.0
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 1.1e-18 100.5 137 47.4
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 5.6e-18 98.2 183 39.9
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.1e-16 94.0 52 80.8
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 4.0e-16 92.0 527 27.5
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 6.9e-16 91.3 253 36.4
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.5e-15 90.1 87 54.0
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 9.9e-15 87.4 69 60.9
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.2e-14 86.3 63 58.7
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 8.4e-14 84.3 99 47.5
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 1.1e-13 84.0 175 40.0
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.4e-13 83.6 67 59.7
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 4.2e-13 82.0 72 54.2
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 4.2e-13 82.0 460 26.1
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.6e-12 80.1 57 66.7
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 2.1e-12 79.7 618 26.1
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 2.7e-12 79.3 476 25.8
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.7e-12 79.3 50 72.0
GSVIVG01032692001 Vitis vinifera HOM05D038408 ORTHO05D007296 6.0e-12 78.2 351 30.5
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 1.0e-11 77.4 448 27.5
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.3e-11 77.0 159 36.5
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 5.1e-11 75.1 104 44.2
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 1.1e-10 73.9 550 26.9
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 9.6e-10 70.9 89 48.3
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 2.1e-09 69.7 545 26.2
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 3.6e-09 68.9 59 55.9
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 6.2e-09 68.2 59 55.9
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 1.1e-08 67.4 406 26.1
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.8e-08 66.6 68 50.0
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.4e-08 66.2 440 27.3
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 9.0e-08 64.3 269 27.9
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 9.0e-08 64.3 165 32.1
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 9.0e-08 64.3 161 33.5
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 2.6e-07 62.8 193 34.2
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 2.6e-07 62.8 489 26.2
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 4.5e-07 62.0 469 26.0
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 4.5e-07 62.0 248 30.2
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 5.8e-07 61.6 402 25.4
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 7.6e-07 61.2 192 34.9
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 7.6e-07 61.2 471 27.0
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 9.9e-07 60.8 109 37.6
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 9.9e-07 60.8 476 23.9
GSVIVG01033147001 Vitis vinifera HOM05D038408 ORTHO05D007296 9.9e-07 60.8 309 30.1
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 1.3e-06 60.5 139 31.7
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 1.3e-06 60.5 530 23.8
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.7e-06 60.1 214 30.8
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 2.2e-06 59.7 290 26.2
Os11g0103100 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 2.2e-06 59.7 191 28.8
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 2.9e-06 59.3 163 30.7
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 2.9e-06 59.3 388 25.3
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 3.8e-06 58.9 461 24.1
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 3.8e-06 58.9 469 25.2
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.8e-06 58.9 248 29.8
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 3.8e-06 58.9 245 27.8
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 4.9e-06 58.5 247 29.6
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.4e-06 58.2 248 29.4
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 6.4e-06 58.2 287 30.7
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 6.4e-06 58.2 282 28.0
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 8.4e-06 57.8 215 30.2
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 8.4e-06 57.8 456 23.9


User provided reference genes

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