Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 4.2e-164 581.3 287 100.0
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.2e-123 446.8 278 82.7
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.5e-116 422.5 234 87.6
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.7e-109 399.8 272 75.0
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.3e-109 399.4 272 75.7
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 6.6e-109 397.9 271 75.3
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 4.3e-108 395.2 275 72.7
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 9.5e-108 394.0 272 71.7
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.1e-106 390.6 270 73.3
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.4e-106 389.4 250 74.0
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 5.2e-106 388.3 262 71.8
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 3.4e-105 385.6 274 71.5
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 7.6e-105 384.4 269 73.2
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.7e-104 383.3 269 70.3
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 6.4e-104 381.3 273 69.2
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 5.4e-103 378.3 270 71.1
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 5.4e-103 378.3 271 73.4
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 3.5e-102 375.6 266 70.3
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 2.3e-101 372.9 258 70.2
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 3.0e-101 372.5 258 70.9
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 6.6e-101 371.3 238 75.6
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 8.7e-101 370.9 274 70.1
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-100 369.8 274 68.2
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 4.3e-100 368.6 247 72.5
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 5.6e-100 368.2 272 66.9
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 9.6e-100 367.5 274 68.6
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.6e-100 367.5 274 68.6
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 6.2e-99 364.8 272 70.2
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.4e-98 363.6 271 66.4
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.4e-98 363.6 273 65.6
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.8e-98 363.2 272 70.2
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 1.8e-98 363.2 270 68.1
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.8e-98 363.2 270 68.1
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 3.1e-98 362.5 267 68.2
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 9.0e-98 360.9 270 67.4
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.2e-97 360.5 246 74.0
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.2e-97 360.5 272 66.2
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 1.5e-97 360.1 245 70.2
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.5e-97 360.1 267 66.3
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.4e-97 359.0 272 69.1
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.6e-97 357.8 271 67.9
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 9.9e-97 357.5 273 66.7
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 1.7e-96 356.7 229 75.5
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 4.9e-96 355.1 272 65.1
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 5.4e-95 351.7 245 69.4
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 7.1e-95 351.3 255 68.6
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.1e-95 351.3 231 73.2
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 9.3e-95 350.9 254 68.5
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.1e-94 349.7 272 66.2
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 3.5e-94 349.0 265 67.2
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 4.6e-94 348.6 244 70.9
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 6.0e-94 348.2 275 63.6
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.3e-93 347.1 274 65.0
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 5.1e-93 345.1 275 62.5
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.1e-92 344.0 244 71.3
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 2.5e-92 342.8 256 68.0
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 3.3e-92 342.4 237 69.2
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 4.3e-92 342.0 231 71.0
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 9.6e-92 340.9 332 56.9
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.3e-91 340.5 245 67.3
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 3.6e-91 339.0 255 67.1
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 3.6e-91 339.0 242 67.8
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 4.8e-91 338.6 276 64.1
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 6.2e-91 338.2 246 66.7
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 1.4e-90 337.0 275 62.2
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.8e-90 336.7 275 60.4
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.8e-90 336.7 275 60.4
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 1.8e-90 336.7 235 69.4
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 1.8e-90 336.7 235 67.2
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 2.4e-90 336.3 254 65.0
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 2.4e-90 336.3 258 65.5
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.1e-90 335.9 251 65.7
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 4.0e-90 335.5 263 65.4
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 4.0e-90 335.5 275 60.0
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 4.0e-90 335.5 270 64.4
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 5.3e-90 335.1 244 67.6
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 6.9e-90 334.7 244 66.8
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 2.0e-89 333.2 270 62.6
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 2.0e-89 333.2 275 60.0
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 2.0e-89 333.2 275 60.0
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.6e-89 332.8 265 63.0
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 2.6e-89 332.8 264 63.6
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 3.4e-89 332.4 265 65.3
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 3.4e-89 332.4 245 66.1
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 7.6e-89 331.3 231 68.8
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 9.9e-89 330.9 245 64.9
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 9.9e-89 330.9 245 65.7
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.3e-88 330.5 281 61.6
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 3.8e-88 328.9 253 64.8
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.9e-88 328.6 286 60.8
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 6.4e-88 328.2 255 66.7
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 6.4e-88 328.2 245 64.1
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 1.1e-87 327.4 238 66.4
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-87 327.4 286 60.5
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-87 327.4 250 67.2
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.4e-87 327.0 245 66.1
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 1.4e-87 327.0 244 65.2
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.9e-87 326.6 240 67.5
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 1.9e-87 326.6 240 64.6
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 4.2e-87 325.5 246 63.4
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.7e-86 322.8 278 59.0
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.7e-86 322.8 246 63.0
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 3.5e-86 322.4 284 60.6
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.0e-85 320.9 256 64.1
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.0e-85 320.9 232 65.5
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 8.7e-85 317.8 237 65.8
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.5e-84 317.0 237 70.0
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.5e-84 317.0 231 64.9
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 2.8e-83 312.8 271 61.3
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.7e-83 312.4 230 67.0
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 6.2e-83 311.6 256 62.1
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 6.9e-82 308.1 270 59.3
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 1.5e-81 307.0 328 51.5
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.7e-80 303.5 278 56.8
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 2.2e-80 303.1 286 55.9
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.5e-78 295.8 241 63.5
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 3.3e-76 289.3 242 60.7
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 5.6e-76 288.5 272 56.2
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.5e-73 278.9 239 60.3
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 7.6e-73 278.1 252 58.3
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.7e-72 276.9 289 54.3
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 2.1e-70 270.0 263 54.4
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.5e-70 269.2 369 45.0
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 4.6e-70 268.9 175 75.4
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.0e-69 267.7 198 64.1
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 8.2e-67 258.1 184 70.7
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.3e-64 250.8 232 55.2
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 2.5e-63 246.5 237 51.9
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 1.1e-60 237.7 174 65.5
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.2e-57 227.6 236 49.6
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.5e-57 225.7 273 48.0
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.5e-55 218.8 223 54.7
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.5e-55 218.8 232 51.7
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.8e-53 213.8 161 61.5
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.8e-53 213.8 245 47.8
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 2.8e-51 206.5 176 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.8e-50 203.8 195 49.2
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 5.0e-48 195.7 278 39.6
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.4e-47 194.1 217 49.3
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.6e-46 190.7 237 48.1
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 2.6e-44 183.3 131 66.4
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 9.4e-39 164.9 169 52.1
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 5.2e-37 159.1 120 65.0
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.0e-32 144.8 98 71.4
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.3e-27 127.9 94 68.1
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 4.8e-27 125.9 215 33.5
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.4e-26 124.4 258 33.7
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 4.5e-25 119.4 75 73.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 3.8e-24 116.3 81 70.4
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.8e-18 97.4 57 75.4
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 2.3e-16 90.5 218 28.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.9e-15 87.4 63 66.7
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 4.3e-15 86.3 58 65.5
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 8.9e-13 78.6 52 71.2
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 7.8e-09 65.5 135 34.1
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 5.6e-07 59.3 35 65.7
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 4.7e-06 56.2 40 65.0


User provided reference genes

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