Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 0.0e+00 1249.6 642 100.0
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 7.8e-243 844.0 628 71.7
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 3.6e-232 808.5 628 69.3
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 9.9e-230 800.4 631 68.8
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 7.4e-177 624.8 633 56.2
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 4.2e-172 609.0 632 55.1
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 9.4e-172 607.8 615 54.3
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 4.7e-171 605.5 633 54.7
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 1.7e-168 597.0 649 53.2
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 1.5e-164 583.9 651 53.1
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 2.5e-164 583.2 591 55.2
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 5.5e-164 582.0 644 53.4
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.8e-162 577.0 582 56.0
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 8.3e-160 568.2 652 51.4
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 4.1e-159 565.8 711 48.2
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 3.8e-157 559.3 620 53.2
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.0e-157 558.9 603 53.2
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 3.2e-156 556.2 634 51.4
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 1.2e-155 554.3 719 47.3
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.8e-154 550.4 635 51.3
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 2.0e-153 547.0 635 51.2
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 2.4e-151 540.0 562 54.8
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.7e-149 533.9 582 52.6
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 2.3e-149 533.5 500 58.8
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.6e-149 531.9 660 49.4
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 2.1e-147 526.9 516 59.3
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.1e-147 525.4 700 47.1
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 3.0e-146 523.1 700 47.0
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.6e-145 520.0 697 47.6
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.4e-145 519.6 697 47.2
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 2.3e-141 506.9 656 47.4
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 6.6e-141 505.4 625 47.7
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 6.2e-139 498.8 679 45.4
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 3.2e-135 486.5 582 49.7
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 6.0e-134 482.3 492 56.1
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 3.0e-133 479.9 507 54.6
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 6.6e-133 478.8 579 48.5
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 6.6e-133 478.8 507 53.8
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 1.9e-132 477.2 511 53.2
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 2.8e-131 473.4 488 53.5
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 4.7e-131 472.6 537 51.4
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.8e-130 470.7 449 56.3
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 6.8e-130 468.8 508 53.0
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.4e-127 461.1 469 55.4
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 3.2e-127 459.9 625 45.3
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 4.1e-127 459.5 348 67.0
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 1.6e-126 457.6 662 43.7
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 2.7e-126 456.8 407 60.0
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 1.0e-125 454.9 338 67.8
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 2.3e-125 453.8 357 64.7
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 2.3e-125 453.8 447 55.0
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 3.0e-125 453.4 748 41.6
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 3.9e-125 453.0 433 57.0
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 2.5e-124 450.3 633 47.2
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 5.6e-124 449.1 621 45.2
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.6e-123 447.6 401 58.9
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.8e-123 446.8 406 58.6
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 6.2e-123 445.7 447 54.8
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.1e-122 444.9 446 57.2
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 1.4e-122 444.5 627 45.0
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 2.4e-122 443.7 357 64.7
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 4.0e-122 443.0 417 57.1
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 6.8e-122 442.2 396 58.8
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 8.9e-122 441.8 651 45.9
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.5e-121 441.0 659 42.2
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 1.5e-121 441.0 357 63.9
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 1.5e-121 441.0 330 67.6
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.5e-121 441.0 728 40.2
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 1.7e-120 437.6 547 47.7
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 8.4e-120 435.3 358 63.1
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 3.2e-119 433.3 347 64.0
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 4.1e-119 433.0 628 44.4
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 5.4e-119 432.6 635 45.4
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 2.7e-118 430.3 336 66.1
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 3.0e-117 426.8 491 52.7
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 3.9e-117 426.4 530 47.4
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 1.9e-116 424.1 346 61.6
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 7.3e-116 422.2 455 53.4
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.2e-115 421.4 499 50.3
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 4.0e-114 416.4 339 62.2
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.6e-113 413.7 648 42.6
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 2.9e-112 410.2 645 42.8
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 3.8e-112 409.8 355 60.0
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 6.4e-112 409.1 659 42.0
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 6.4e-112 409.1 659 42.0
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 8.4e-112 408.7 636 39.9
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.1e-111 408.3 580 44.3
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.7e-110 403.7 484 47.7
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 3.5e-110 403.3 641 41.7
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 3.5e-110 403.3 641 41.7
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 3.5e-110 403.3 484 47.7
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 1.0e-109 401.7 654 41.1
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 2.3e-109 400.6 641 41.7
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 5.1e-109 399.4 638 41.2
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.6e-107 394.4 638 41.2
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.8e-106 391.0 311 64.3
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 9.0e-106 388.7 338 57.7
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 2.0e-105 387.5 444 49.3
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 4.5e-105 386.3 307 63.2
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.5e-105 386.3 338 60.9
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 7.6e-105 385.6 465 48.2
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 6.0e-102 375.9 331 59.8
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 3.9e-101 373.2 360 55.3
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 4.8e-99 366.3 322 59.0
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 6.0e-94 349.4 584 39.4
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 3.4e-89 333.6 587 38.2
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.3e-85 321.6 239 69.9
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 4.6e-78 296.6 205 71.2
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 1.1e-76 292.0 397 45.1
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 5.7e-76 289.7 291 55.7
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 5.0e-72 276.6 205 66.3
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.4e-63 248.4 245 51.4
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 7.2e-63 246.1 293 44.4
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 2.1e-62 244.6 329 40.4
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 1.0e-61 242.3 304 46.7
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 8.2e-59 232.6 450 38.0
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 9.1e-58 229.2 439 36.2
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 5.2e-45 186.8 274 46.4
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 2.8e-43 181.0 234 47.9
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.8e-38 164.5 129 67.4
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 8.3e-35 152.9 148 56.1
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.1e-34 152.5 113 64.6
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 1.1e-34 152.5 406 32.5
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 5.4e-34 150.2 166 50.0
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.4e-26 125.6 282 29.4
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 1.0e-24 119.4 128 45.3
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 8.6e-24 116.3 122 52.5
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 3.3e-23 114.4 84 65.5
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.4e-18 98.2 83 59.0
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.2e-17 95.9 62 72.6
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 4.3e-15 87.4 180 29.4
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 5.6e-15 87.0 55 76.4
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 5.6e-15 87.0 55 76.4
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 4.7e-14 84.0 56 71.4
Cfa010666 Carpinus fangiana HOM05D005647 ORTHO05D006968 2.9e-11 74.7 54 72.2
QL01p034573 Quercus lobata HOM05D005647 ORTHO05D006968 1.2e-09 69.3 63 61.9
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 1.9e-07 62.0 74 43.2


User provided reference genes

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