Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 6.2e-205 717.2 362 100.0
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 7.7e-163 577.4 357 80.4
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.9e-161 572.8 356 81.2
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 5.5e-161 571.2 349 81.4
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.7e-160 568.9 361 81.2
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 2.3e-159 565.8 350 80.9
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 6.7e-159 564.3 367 79.0
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 6.7e-159 564.3 352 81.5
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.1e-158 563.5 352 79.3
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 2.0e-158 562.8 357 79.3
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 3.3e-158 562.0 360 81.1
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 9.7e-158 560.5 357 78.4
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 6.3e-157 557.8 356 78.9
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 6.3e-157 557.8 356 79.5
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 6.3e-157 557.8 353 78.5
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 8.2e-157 557.4 356 79.5
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 8.2e-157 557.4 360 76.9
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 1.4e-156 556.6 360 76.7
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.4e-156 556.6 350 78.0
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 2.4e-156 555.8 360 77.8
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 4.1e-156 555.1 349 79.9
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 4.1e-156 555.1 351 78.1
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 7.0e-156 554.3 360 78.6
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 2.0e-155 552.7 360 78.1
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.5e-155 552.0 360 76.4
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 5.9e-155 551.2 358 76.8
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 5.9e-155 551.2 358 76.8
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 5.9e-155 551.2 358 76.8
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 5.9e-155 551.2 358 77.7
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 7.7e-155 550.8 358 76.8
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 7.7e-155 550.8 360 78.3
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.0e-154 550.4 360 76.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.3e-154 550.1 354 78.0
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 2.2e-154 549.3 350 76.9
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 2.9e-154 548.9 358 76.5
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 5.0e-154 548.1 352 76.7
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 8.5e-154 547.4 358 76.3
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 8.5e-154 547.4 351 78.1
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.5e-153 546.6 349 78.2
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.5e-153 546.6 353 78.5
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 3.2e-153 545.4 350 76.3
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 4.2e-153 545.0 351 76.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 4.2e-153 545.0 360 76.7
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.5e-153 544.7 354 77.7
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 9.4e-153 543.9 358 76.0
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.2e-152 543.5 351 75.8
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.1e-152 542.7 354 77.4
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.7e-152 541.6 353 77.1
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 1.4e-151 540.0 349 78.2
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.4e-151 540.0 354 77.7
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.8e-151 539.7 354 77.4
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 5.2e-151 538.1 354 76.3
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.2e-150 537.0 350 76.9
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.2e-150 537.0 353 76.8
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 7.5e-150 534.3 354 74.6
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 4.8e-149 531.6 387 71.1
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 4.8e-149 531.6 354 75.4
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 6.3e-149 531.2 359 75.2
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 8.2e-149 530.8 353 76.8
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.4e-148 530.0 347 79.3
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 1.4e-148 530.0 357 73.9
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.1e-148 528.9 350 75.7
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 9.1e-148 527.3 354 76.0
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 1.2e-147 526.9 357 73.7
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 2.7e-147 525.8 378 71.7
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 4.5e-147 525.0 352 75.6
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 5.9e-147 524.6 354 76.0
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.0e-146 523.9 372 71.2
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 1.3e-146 523.5 359 73.8
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.7e-146 523.1 360 75.3
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 6.5e-146 521.2 358 73.7
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.1e-145 520.4 360 73.9
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.1e-145 520.4 356 73.3
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.1e-144 516.2 358 73.2
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 4.7e-144 515.0 343 76.4
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 8.0e-144 514.2 302 81.5
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 1.2e-142 510.4 347 72.9
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 1.5e-142 510.0 351 72.6
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.7e-141 505.4 356 72.8
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 4.8e-141 505.0 345 75.4
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 1.1e-140 503.8 353 72.8
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 2.4e-140 502.7 351 72.9
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 4.1e-140 501.9 354 75.7
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 4.1e-140 501.9 354 72.9
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.7e-138 496.5 353 73.4
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 2.9e-138 495.7 306 84.0
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.1e-137 493.8 344 75.6
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 4.7e-136 488.4 350 68.6
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 1.4e-135 486.9 356 69.9
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 9.8e-134 480.7 377 66.8
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 1.3e-133 480.3 377 67.6
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.1e-132 477.2 303 75.9
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.8e-132 476.5 304 77.0
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 7.0e-132 474.6 396 63.9
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 1.5e-129 466.8 303 80.2
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 9.5e-129 464.2 326 73.0
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 6.1e-128 461.5 341 73.3
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 6.1e-128 461.5 285 78.6
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 6.8e-127 458.0 347 71.2
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.4e-126 455.7 347 70.6
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 3.4e-126 455.7 343 66.8
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 3.7e-125 452.2 356 69.1
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 8.3e-125 451.1 313 72.5
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 3.2e-124 449.1 302 75.8
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 8.0e-120 434.5 364 65.1
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.4e-119 433.7 256 82.0
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 1.5e-118 430.3 256 81.2
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 7.5e-118 427.9 356 62.9
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 3.7e-117 425.6 325 68.3
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 8.3e-117 424.5 353 67.1
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 3.5e-115 419.1 296 72.0
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 4.7e-112 408.7 298 69.8
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 8.1e-112 407.9 296 70.3
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 9.2e-108 394.4 238 80.3
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 1.7e-106 390.2 298 67.8
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 3.3e-105 386.0 265 77.0
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 1.4e-103 380.6 389 57.3
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 9.9e-102 374.4 253 77.9
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 2.2e-101 373.2 256 77.7
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 3.8e-101 372.5 261 75.9
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 8.4e-101 371.3 344 54.9
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.4e-100 369.8 344 54.7
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 4.1e-100 369.0 260 74.6
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 7.1e-100 368.2 303 65.7
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 7.8e-99 364.8 333 57.7
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.1e-95 354.4 351 53.3
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 9.3e-92 341.3 232 78.0
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 4.5e-86 322.4 279 56.3
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 9.9e-86 321.2 220 75.5
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 4.9e-85 318.9 192 81.2
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.5e-81 307.4 257 64.2
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.8e-80 303.1 237 68.8
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.0e-78 297.0 197 75.1
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 6.4e-77 292.0 327 46.5
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 1.2e-62 244.6 187 66.8
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.5e-60 236.9 166 72.9
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 7.2e-60 235.3 365 41.9
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 5.3e-47 192.6 172 61.6
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 2.1e-35 154.1 98 74.5
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 2.2e-29 134.0 73 79.5
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 3.8e-29 133.3 74 81.1
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 5.0e-29 132.9 73 79.5
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 5.0e-29 132.9 73 79.5
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 1.1e-28 131.7 73 80.8
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 4.0e-26 123.2 63 85.7
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 6.3e-24 115.9 138 50.7
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 3.6e-19 100.1 95 57.9
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 5.4e-07 59.7 40 72.5
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 1.6e-06 58.2 49 65.3


User provided reference genes

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