Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G097000 Carya illinoinensis HOM05D006284 ORTHO05D007793 9.6e-77 290.0 142 100.0
QL01p032751 Quercus lobata HOM05D006284 ORTHO05D007793 6.7e-70 267.3 141 90.8
Haze_24061 Corylus avellana HOM05D006284 ORTHO05D007793 1.1e-67 260.0 142 88.0
Atru.chr3.3846 Acer truncatum HOM05D006284 ORTHO05D007793 7.6e-66 253.8 139 89.2
Dinv03613 Davidia involucrata HOM05D006284 ORTHO05D007793 2.2e-65 252.3 139 88.5
FAN11G1150 Fragaria x ananassa HOM05D006284 ORTHO05D007793 2.7e-63 245.4 140 84.3
FAN21G0749 Fragaria x ananassa HOM05D006284 ORTHO05D007793 2.7e-63 245.4 140 84.3
FAN16G2200 Fragaria x ananassa HOM05D006284 ORTHO05D007793 3.5e-63 245.0 140 84.3
Rhsim01G0226200 Rhododendron simsii HOM05D006284 ORTHO05D007793 4.6e-63 244.6 139 85.6
Medtr4g063500 Medicago truncatula HOM05D006284 ORTHO05D007793 6.0e-63 244.2 142 82.4
RcHm_v2.0_Chr5g0063801 Rosa chinensis HOM05D006284 ORTHO05D007793 6.0e-63 244.2 140 85.0
arahy.Tifrunner.gnm1.ann1.W3SBYC Arachis hypogaea HOM05D006284 ORTHO05D007793 7.9e-63 243.8 142 82.4
Hma1.2p1_1897F.1_g306861 Hydrangea macrophylla HOM05D006284 ORTHO05D007793 7.9e-63 243.8 134 88.8
Lalb_Chr01g0003741 Lupinus albus HOM05D006284 ORTHO05D007793 1.8e-62 242.7 139 85.6
Ca_19180_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 8.7e-62 240.4 141 81.6
Ca_31183_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 8.7e-62 240.4 141 81.6
MD11G1144900 Malus domestica HOM05D006284 ORTHO05D007793 1.5e-61 239.6 138 81.9
Psat7g217680 Pisum sativum HOM05D006284 ORTHO05D007793 1.5e-61 239.6 141 81.6
arahy.Tifrunner.gnm1.ann1.6H51DS Arachis hypogaea HOM05D006284 ORTHO05D007793 1.9e-61 239.2 142 81.0
Cpa.g.sc190.6 Carica papaya HOM05D006284 ORTHO05D007793 2.5e-61 238.8 142 82.4
TAR623G0100 Trochodendron aralioides HOM05D006284 ORTHO05D007793 4.3e-61 238.0 136 85.3
vmacro14530 Vaccinium macrocarpon HOM05D006284 ORTHO05D007793 4.3e-61 238.0 139 82.0
Prupe.6G080800 Prunus persica HOM05D006284 ORTHO05D007793 1.3e-60 236.5 136 81.6
PGR102G0171 Punica granatum HOM05D006284 ORTHO05D007793 1.3e-60 236.5 142 79.6
Aqoxy4G02964 Aquilegia oxysepala HOM05D006284 ORTHO05D007793 2.8e-60 235.3 141 78.0
Duzib168G1259 Durio zibethinus HOM05D006284 ORTHO05D007793 2.8e-60 235.3 143 79.0
BcaC07g42493 Brassica carinata HOM05D006284 ORTHO05D007793 8.2e-60 233.8 136 83.1
CANSAT54G2008 Cannabis sativa HOM05D006284 ORTHO05D007793 8.2e-60 233.8 143 79.7
Thhalv10009069m.g Eutrema salsugineum HOM05D006284 ORTHO05D007793 1.1e-59 233.4 136 82.4
AL1G17850 Arabidopsis lyrata HOM05D006284 ORTHO05D007793 1.4e-59 233.0 136 82.4
BcaC07g41981 Brassica carinata HOM05D006284 ORTHO05D007793 1.4e-59 233.0 136 83.1
BcaC07g42491 Brassica carinata HOM05D006284 ORTHO05D007793 1.4e-59 233.0 136 83.1
C08p50410 Brassica napus HOM05D006284 ORTHO05D007793 1.4e-59 233.0 136 83.1
BolC8t52569H Brassica oleracea HOM05D006284 ORTHO05D007793 1.4e-59 233.0 136 83.1
GSVIVG01025000001 Vitis vinifera HOM05D006284 ORTHO05D007793 1.4e-59 233.0 140 81.4
Carub.0001s0699 Capsella rubella HOM05D006284 ORTHO05D007793 1.8e-59 232.6 136 81.6
Thecc.09G324900 Theobroma cacao HOM05D006284 ORTHO05D007793 1.8e-59 232.6 143 79.0
Eucgr.B02382 Eucalyptus grandis HOM05D006284 ORTHO05D007793 2.4e-59 232.3 138 81.2
Aa31sc281G30 Aethionema arabicum HOM05D006284 ORTHO05D007793 3.1e-59 231.9 139 80.6
ECA247G3393 Erigeron canadensis HOM05D006284 ORTHO05D007793 3.1e-59 231.9 137 82.5
HanXRQChr15g0493271 Helianthus annuus HOM05D006284 ORTHO05D007793 3.1e-59 231.9 135 82.2
A09p66230 Brassica napus HOM05D006284 ORTHO05D007793 5.3e-59 231.1 136 82.4
Oeu041449.2 Olea europaea HOM05D006284 ORTHO05D007793 6.9e-59 230.7 139 79.1
Potri.001G237500 Populus trichocarpa HOM05D006284 ORTHO05D007793 6.9e-59 230.7 143 78.3
Nitab4.5_0001304g0050 Nicotiana tabacum HOM05D006284 ORTHO05D007793 1.2e-58 229.9 137 79.6
AT1G07645 Arabidopsis thaliana HOM05D006284 ORTHO05D007793 2.0e-58 229.2 136 80.9
BraA09t41961Z Brassica rapa HOM05D006284 ORTHO05D007793 2.0e-58 229.2 136 81.6
Sed0023805 Sechium edule HOM05D006284 ORTHO05D007793 2.0e-58 229.2 139 78.4
Sabra16G0143200 Salix brachista HOM05D006284 ORTHO05D007793 4.5e-58 228.0 143 79.0
Glyma.12G064500 Glycine max HOM05D006284 ORTHO05D007793 5.9e-58 227.6 139 78.4
Sp1g06380 Schrenkiella parvula HOM05D006284 ORTHO05D007793 5.9e-58 227.6 136 80.9
Actinidia33860 Actinidia chinensis HOM05D006284 ORTHO05D007793 7.6e-58 227.3 138 81.2
Phvul.011G065500 Phaseolus vulgaris HOM05D006284 ORTHO05D007793 7.6e-58 227.3 139 77.7
VMungo1127G1430 Vigna mungo HOM05D006284 ORTHO05D007793 7.6e-58 227.3 139 77.0
Nitab4.5_0001838g0030 Nicotiana tabacum HOM05D006284 ORTHO05D007793 1.3e-57 226.5 137 77.4
EL10Ac7g15985 Beta vulgaris HOM05D006284 ORTHO05D007793 1.7e-57 226.1 139 76.3
ClCG02G020310 Citrullus lanatus HOM05D006284 ORTHO05D007793 3.8e-57 224.9 142 75.4
BcaC07g42490 Brassica carinata HOM05D006284 ORTHO05D007793 5.0e-57 224.6 137 81.8
MSTRG.15272 Avicennia marina HOM05D006284 ORTHO05D007793 6.5e-57 224.2 135 82.2
BraA06t23686Z Brassica rapa HOM05D006284 ORTHO05D007793 6.5e-57 224.2 141 78.7
PGSC0003DMG400030315 Solanum tuberosum HOM05D006284 ORTHO05D007793 6.5e-57 224.2 135 79.3
CAN.G394.47 Capsicum annuum HOM05D006284 ORTHO05D007793 8.5e-57 223.8 135 78.5
Peaxi162Scf00679g00212 Petunia axillaris HOM05D006284 ORTHO05D007793 8.5e-57 223.8 136 78.7
A06p04820 Brassica napus HOM05D006284 ORTHO05D007793 1.1e-56 223.4 137 80.3
PSO339G4936 Papaver somniferum HOM05D006284 ORTHO05D007793 1.1e-56 223.4 135 80.7
C05p05670 Brassica napus HOM05D006284 ORTHO05D007793 1.4e-56 223.0 137 80.3
BolC5t29337H Brassica oleracea HOM05D006284 ORTHO05D007793 1.4e-56 223.0 137 80.3
CARHR007450 Cardamine hirsuta HOM05D006284 ORTHO05D007793 1.4e-56 223.0 134 78.4
Oeu056746.1 Olea europaea HOM05D006284 ORTHO05D007793 1.4e-56 223.0 139 76.3
Sopen06g032410 Solanum pennellii HOM05D006284 ORTHO05D007793 1.4e-56 223.0 135 77.8
Solyc06g075990.4 Solanum lycopersicum HOM05D006284 ORTHO05D007793 2.5e-56 222.2 134 77.6
COL.COLO4_18479 Corchorus olitorius HOM05D006284 ORTHO05D007793 3.2e-56 221.9 143 74.8
Lsat_1_v5_gn_5_183840 Lactuca sativa HOM05D006284 ORTHO05D007793 7.2e-56 220.7 135 79.3
DCAR_015613 Daucus carota HOM05D006284 ORTHO05D007793 9.3e-56 220.3 137 77.4
Lj3g0026697 Lotus japonicus HOM05D006284 ORTHO05D007793 9.3e-56 220.3 135 79.3
Manes.11G132300 Manihot esculenta HOM05D006284 ORTHO05D007793 9.3e-56 220.3 141 75.9
Migut.L00518 Erythranthe guttata HOM05D006284 ORTHO05D007793 1.6e-55 219.5 135 80.7
Gorai.009G100800 Gossypium raimondii HOM05D006284 ORTHO05D007793 3.6e-55 218.4 143 73.4
PSO384G0339 Papaver somniferum HOM05D006284 ORTHO05D007793 4.6e-55 218.0 135 79.3
THA.LOC104800652 Tarenaya hassleriana HOM05D006284 ORTHO05D007793 4.6e-55 218.0 138 75.4
Gohir.A05G097100 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.0e-54 216.9 143 72.7
Lsat_1_v5_gn_9_22581 Lactuca sativa HOM05D006284 ORTHO05D007793 1.0e-54 216.9 135 77.8
MELO3C013690.2 Cucumis melo HOM05D006284 ORTHO05D007793 1.3e-54 216.5 142 71.8
AUR62009602 Chenopodium quinoa HOM05D006284 ORTHO05D007793 1.8e-54 216.1 139 73.4
CsaV3_6G017010 Cucumis sativus L. HOM05D006284 ORTHO05D007793 8.7e-54 213.8 142 71.1
Os03g0277500 Oryza sativa ssp. japonica HOM05D006284 ORTHO05D007793 1.9e-53 212.6 131 77.1
SalBow5G5166 Salvia bowleyana HOM05D006284 ORTHO05D007793 1.3e-52 209.9 135 77.0
Sc06g0008270 Simmondsia chinensis HOM05D006284 ORTHO05D007793 1.6e-52 209.5 135 71.9
AUR62001816 Chenopodium quinoa HOM05D006284 ORTHO05D007793 6.3e-52 207.6 135 72.6
Migut.L00567 Erythranthe guttata HOM05D006284 ORTHO05D007793 8.2e-52 207.2 128 80.5
Gohir.D05G097250 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.1e-51 206.8 143 69.2
TWI79G0071 Tripterygium wilfordii HOM05D006284 ORTHO05D007793 3.4e-50 201.8 142 72.5
SHI00991 Sapria himalayana HOM05D006284 ORTHO05D007793 1.4e-48 196.4 142 67.6
SGA_v2.0_scaffold606G53170 Striga asiatica HOM05D006284 ORTHO05D007793 7.2e-48 194.1 132 73.5
Ciclev10029580m.g Citrus clementina HOM05D006284 ORTHO05D007793 1.4e-46 189.9 114 83.3
Gohir.A07G096400 Gossypium hirsutum HOM05D006284 ORTHO05D007793 9.7e-45 183.7 162 60.5
Zm00001eb012550 Zea mays HOM05D006284 ORTHO05D007793 3.1e-43 178.7 130 67.7
Mapoly0004s0146 Marchantia polymorpha HOM05D006284 ORTHO05D007793 2.9e-41 172.2 127 66.9
FvH4_3g35580 Fragaria vesca HOM05D006284 ORTHO05D007793 6.5e-41 171.0 140 66.4
MBI14_g11686_MAGBIO Magnolia biondii HOM05D006284 ORTHO05D007793 6.5e-41 171.0 136 64.0
SMO165G0091 Selaginella moellendorffii HOM05D006284 ORTHO05D007793 1.6e-39 166.4 132 59.1
Gorai.001G108700 Gossypium raimondii HOM05D006284 ORTHO05D007793 1.0e-38 163.7 131 66.4
Gohir.D07G100800 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.8e-38 162.9 157 58.6
Lj2A1058T40 Lonicera japonica HOM05D006284 ORTHO05D007793 5.2e-38 161.4 94 80.9
CSS0000036 Camellia sinensis var. sinensis HOM05D006284 ORTHO05D007793 1.1e-37 160.2 142 62.0
TPR.G10205 Trifolium pratense HOM05D006284 ORTHO05D007793 2.6e-37 159.1 101 77.2
Oeu033642.1 Olea europaea HOM05D006284 ORTHO05D007793 1.4e-35 153.3 102 71.6
FAN11G3292 Fragaria x ananassa HOM05D006284 ORTHO05D007793 2.4e-35 152.5 140 61.4
DCAR_018897 Daucus carota HOM05D006284 ORTHO05D007793 4.1e-35 151.8 99 70.7
Oeu056758.1 Olea europaea HOM05D006284 ORTHO05D007793 1.2e-34 150.2 96 74.0
Oeu056739.1 Olea europaea HOM05D006284 ORTHO05D007793 1.3e-33 146.7 136 58.1
Oeu056743.1 Olea europaea HOM05D006284 ORTHO05D007793 7.2e-32 141.0 99 66.7
Peaxi162Scf00406g00314 Petunia axillaris HOM05D006284 ORTHO05D007793 1.6e-23 113.2 139 48.2
AagrBONN_evm.TU.Sc2ySwM_117.384 Anthoceros agrestis HOM05D006284 ORTHO05D007793 5.2e-22 108.2 132 44.7
FvH4_3g35610 Fragaria vesca HOM05D006284 ORTHO05D007793 5.2e-22 108.2 140 47.1
SEGI_15500 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 2.6e-21 105.9 96 57.3
AagrBONN_evm.TU.Sc2ySwM_344.4820 Anthoceros agrestis HOM05D006284 ORTHO05D007793 1.3e-20 103.6 96 55.2
CANSAT21G1079 Cannabis sativa HOM05D002411 ORTHO05D002564 3.7e-20 102.1 60 80.0
AagrBONN_evm.TU.Sc2ySwM_344.4822 Anthoceros agrestis HOM05D018382 ORTHO05D001873 4.1e-19 98.6 118 44.9
MD07G1053700 Malus domestica HOM05D006284 ORTHO05D007793 2.7e-18 95.9 62 71.0
MD14G1025700 Malus domestica HOM05D006284 ORTHO05D007793 2.3e-17 92.8 62 69.4
Pp3c19_1590 Physcomitrium patens HOM05D006284 ORTHO05D007793 1.9e-16 89.7 126 38.9
Cc01_g12610 Coffea canephora HOM05D006284 ORTHO05D007793 2.3e-14 82.8 44 88.6
TPR.G10968 Trifolium pratense HOM05D006284 ORTHO05D007793 4.0e-14 82.0 46 82.6
ATR0559G308 Amborella trichopoda HOM05D006284 ORTHO05D007793 4.5e-10 68.6 37 83.8
Cc01_g12620 Coffea canephora HOM05D006284 ORTHO05D007793 1.3e-09 67.0 35 85.7
Ah.08g219180 Amaranthus hybridus HOM05D006284 ORTHO05D007793 5.6e-08 61.6 41 78.0
SEGI_40910 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 2.1e-07 59.7 72 40.3


User provided reference genes

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