Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 8.5e-47 189.9 89 100.0
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.6e-40 168.3 81 98.8
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.0e-36 156.4 85 84.7
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 3.3e-35 151.4 89 76.4
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 3.3e-35 151.4 84 83.3
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 5.7e-35 150.6 84 82.1
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 6.3e-34 147.1 81 84.0
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 6.3e-34 147.1 87 80.5
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 1.2e-32 142.9 81 85.2
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 3.5e-32 141.4 81 79.0
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 5.9e-32 140.6 86 72.1
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 5.0e-31 137.5 81 77.8
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 5.0e-31 137.5 81 80.2
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 6.5e-31 137.1 81 77.8
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 6.5e-31 137.1 81 76.5
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 8.5e-31 136.7 81 77.8
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 1.9e-30 135.6 81 74.1
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 2.5e-30 135.2 81 75.3
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 3.2e-30 134.8 81 75.3
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 5.5e-30 134.0 81 70.4
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 5.5e-30 134.0 81 75.3
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 9.4e-30 133.3 81 75.3
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 9.4e-30 133.3 81 75.3
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 9.4e-30 133.3 81 72.8
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 9.4e-30 133.3 81 74.1
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 1.2e-29 132.9 81 77.8
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.2e-29 132.9 81 77.8
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.2e-29 132.9 81 77.8
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.2e-29 132.9 81 77.8
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.6e-29 132.5 81 76.5
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 2.7e-29 131.7 81 71.6
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 3.6e-29 131.3 81 71.6
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 3.6e-29 131.3 81 71.6
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 4.7e-29 131.0 81 71.6
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 4.7e-29 131.0 81 70.4
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 4.7e-29 131.0 82 70.7
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 4.7e-29 131.0 81 75.3
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 4.7e-29 131.0 81 75.3
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 6.1e-29 130.6 81 71.6
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 8.0e-29 130.2 81 72.8
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.0e-29 130.2 81 76.5
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 1.0e-28 129.8 81 71.6
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.0e-28 129.8 81 74.1
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 1.4e-28 129.4 81 75.3
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 1.4e-28 129.4 81 75.3
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 1.8e-28 129.0 81 74.1
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 1.8e-28 129.0 81 71.6
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 2.3e-28 128.6 81 71.6
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 2.3e-28 128.6 81 71.6
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.3e-28 128.6 81 70.4
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 2.3e-28 128.6 81 70.4
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.3e-28 128.6 81 70.4
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 3.0e-28 128.3 81 71.6
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 3.0e-28 128.3 81 71.6
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 3.0e-28 128.3 81 70.4
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 5.2e-28 127.5 81 75.3
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 6.7e-28 127.1 81 69.1
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 6.7e-28 127.1 81 71.6
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.2e-27 126.3 81 71.6
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.5e-27 125.9 81 69.1
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.5e-27 125.9 81 69.1
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.5e-27 125.9 81 72.8
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 2.0e-27 125.6 81 70.4
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 2.0e-27 125.6 81 70.4
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 2.0e-27 125.6 82 74.4
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 2.0e-27 125.6 84 71.4
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 3.3e-27 124.8 81 69.1
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 3.3e-27 124.8 82 72.0
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 3.3e-27 124.8 81 67.9
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 4.4e-27 124.4 81 69.1
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 6.3e-26 120.6 81 69.1
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 6.3e-26 120.6 81 69.1
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 1.1e-25 119.8 79 68.4
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 1.4e-25 119.4 81 64.2
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 1.8e-25 119.0 81 67.9
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 4.1e-25 117.9 81 69.1
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 4.1e-25 117.9 81 65.4
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 4.1e-25 117.9 81 65.4
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 5.3e-25 117.5 81 66.7
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 1.2e-24 116.3 81 66.7
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 1.2e-24 116.3 81 66.7
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 1.2e-24 116.3 81 66.7
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 1.2e-24 116.3 81 66.7
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 1.6e-24 115.9 81 66.7
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 3.5e-24 114.8 81 65.4
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 7.7e-24 113.6 83 61.4
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 1.0e-23 113.2 81 65.4
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 6.5e-23 110.5 81 63.0
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 2.7e-21 105.1 76 63.2
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 2.7e-21 105.1 79 62.0
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.6e-21 104.8 79 60.8
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.0e-20 103.2 79 60.8
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 4.0e-20 101.3 78 55.1
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 2.6e-19 98.6 59 74.6
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 7.5e-19 97.1 57 73.7
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 1.8e-17 92.4 72 54.2
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 5.4e-17 90.9 81 51.9
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 7.0e-17 90.5 86 48.8
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 9.1e-17 90.1 59 66.1
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.7e-16 88.6 63 68.3
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 7.7e-16 87.0 59 69.5
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 2.9e-15 85.1 59 67.8
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 3.8e-15 84.7 64 57.8
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 2.8e-13 78.6 80 46.2
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 8.9e-12 73.6 65 55.4
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.2e-11 73.2 77 51.9
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 2.0e-11 72.4 80 42.5
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 4.4e-11 71.2 77 46.8
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 7.5e-11 70.5 45 66.7
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 7.5e-11 70.5 45 66.7
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 4.9e-10 67.8 41 73.2
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 3.5e-08 61.6 43 55.8
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 5.9e-08 60.8 41 63.4


User provided reference genes

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