Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.2e-90 335.1 172 100.0
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 5.8e-60 234.6 173 72.8
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 3.2e-58 228.8 174 71.8
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 2.1e-49 199.5 177 67.2
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 5.1e-48 194.9 176 60.8
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 5.6e-47 191.4 178 62.9
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 7.4e-47 191.0 178 61.2
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 9.6e-47 190.7 176 63.6
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.6e-46 189.9 177 62.1
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.1e-45 187.2 177 59.3
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.8e-45 186.4 176 61.9
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 3.1e-45 185.7 179 57.5
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 3.4e-44 182.2 178 61.2
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 3.4e-44 182.2 178 61.2
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 3.4e-44 182.2 178 61.2
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 5.8e-44 181.4 177 58.8
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 2.2e-43 179.5 175 60.0
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.9e-43 179.1 175 61.1
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.8e-43 178.7 175 60.0
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 4.9e-43 178.3 180 60.6
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.4e-42 176.0 178 59.6
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 4.2e-42 175.3 178 59.0
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 1.2e-41 173.7 180 58.3
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.6e-41 171.8 180 58.3
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.3e-40 170.2 182 52.7
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.8e-40 169.9 179 56.4
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.8e-40 169.9 178 58.4
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 2.3e-40 169.5 178 54.5
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 5.1e-40 168.3 173 56.1
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.1e-39 167.2 171 57.9
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.1e-39 167.2 178 53.4
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 1.9e-39 166.4 182 54.9
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 4.3e-39 165.2 183 53.0
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.6e-39 164.9 193 55.4
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.8e-38 162.5 175 55.4
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 3.7e-38 162.2 183 56.8
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 3.7e-38 162.2 182 52.2
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 4.8e-38 161.8 183 54.1
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.1e-37 160.6 179 53.1
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 1.1e-37 160.6 172 56.4
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 4.0e-37 158.7 178 53.4
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 6.9e-37 157.9 183 55.2
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 9.0e-37 157.5 178 56.7
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 9.0e-37 157.5 179 54.7
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 5.8e-36 154.8 171 56.1
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.3e-35 153.7 184 52.2
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.3e-35 153.7 178 53.4
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 2.2e-35 152.9 182 53.8
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 6.5e-35 151.4 178 53.4
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 8.4e-35 151.0 175 56.6
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 1.4e-34 150.2 181 51.9
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.9e-34 149.8 175 52.6
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 5.5e-34 148.3 175 52.0
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 5.5e-34 148.3 183 50.8
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 9.3e-34 147.5 99 77.8
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.2e-33 147.1 172 53.5
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 2.7e-33 146.0 171 49.7
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 7.9e-33 144.4 174 54.0
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 1.0e-32 144.1 180 51.7
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 1.3e-32 143.7 180 51.1
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.3e-32 143.7 183 51.4
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 1.8e-32 143.3 176 53.4
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.3e-32 142.9 175 50.3
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.9e-32 142.1 174 48.9
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 5.1e-32 141.7 175 54.3
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 8.7e-32 141.0 172 52.9
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.7e-32 141.0 172 55.8
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 1.5e-31 140.2 176 50.6
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 1.9e-31 139.8 176 52.8
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 3.3e-31 139.0 172 50.0
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 5.7e-31 138.3 177 50.8
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.3e-30 137.1 181 50.3
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.6e-30 136.7 171 49.7
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.6e-30 136.7 171 52.0
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.6e-30 136.7 171 50.9
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 2.2e-30 136.3 175 48.0
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 2.8e-30 136.0 180 49.4
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 6.3e-30 134.8 187 49.7
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.3e-30 134.8 172 53.5
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 6.3e-30 134.8 172 53.5
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-29 134.0 173 50.9
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.1e-29 134.0 174 50.0
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 2.4e-29 132.9 179 51.4
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 4.1e-29 132.1 179 50.8
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 6.9e-29 131.3 180 51.7
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 9.0e-29 131.0 178 50.6
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 1.2e-28 130.6 180 48.3
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.6e-28 129.4 167 53.3
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.3e-27 127.1 176 49.4
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 2.2e-27 126.3 171 48.0
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.5e-27 124.8 167 50.9
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 1.4e-26 123.6 175 49.1
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.4e-26 123.6 179 46.9
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 9.3e-26 120.9 179 44.7
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.6e-25 120.2 167 49.7
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.6e-25 119.0 191 45.0
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 1.0e-24 117.5 177 48.6
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 1.0e-24 117.5 177 48.6
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 1.0e-24 117.5 177 48.6
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.3e-24 117.1 170 49.4
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.8e-24 116.7 180 46.7
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 6.7e-24 114.8 176 47.7
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 6.7e-24 114.8 170 48.2
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.9e-23 113.2 160 47.5
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.9e-23 113.2 177 46.9
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 4.3e-23 112.1 177 44.1
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.7e-23 111.7 189 42.3
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 5.7e-23 111.7 196 43.4
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 7.4e-23 111.3 75 73.3
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 7.4e-23 111.3 177 45.2
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.3e-22 110.5 189 41.8
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 2.8e-22 109.4 83 74.7
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 3.7e-22 109.0 178 45.5
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 4.8e-22 108.6 179 44.7
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 9.1e-21 104.4 222 37.4
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.6e-20 102.8 160 44.4
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 4.5e-20 102.1 157 47.1
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 5.9e-20 101.7 144 45.1
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.9e-19 99.4 189 39.2
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 1.2e-17 94.0 82 62.2
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 4.7e-17 92.0 122 45.9
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.1e-17 91.7 180 37.8
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 1.0e-16 90.9 143 42.7
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.0e-16 90.9 180 41.7
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 8.8e-16 87.8 174 41.4
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 2.6e-15 86.3 173 39.9
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 3.3e-15 85.9 169 40.8
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 3.7e-14 82.4 170 41.2
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 8.2e-14 81.3 138 44.2
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 5.9e-12 75.1 201 35.3
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 5.9e-12 75.1 165 35.8
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 7.7e-12 74.7 177 40.1
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.7e-12 74.7 66 60.6
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 1.0e-11 74.3 138 37.7
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 2.9e-11 72.8 130 38.5
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 6.5e-11 71.6 146 39.0
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 6.5e-11 71.6 139 35.3
SHI05935 Sapria himalayana HOM05D004998 ORTHO05D006104 6.5e-11 71.6 137 42.3
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 8.0e-09 64.7 215 34.4
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 1.0e-08 64.3 130 39.2
Medtr4g064210 Medicago truncatula HOM05D004998 ORTHO05D006104 3.9e-08 62.4 52 53.8
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 5.2e-08 62.0 106 40.6
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 6.7e-08 61.6 60 55.0
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 6.3e-06 55.1 55 54.5


User provided reference genes

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