Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G089400 Carya illinoinensis HOM05D008943 ORTHO05D010477 3.6e-64 248.1 123 100.0
CiPaw.14G065200 Carya illinoinensis HOM05D008943 ORTHO05D010477 4.2e-36 154.8 129 65.9
QL01p029253 Quercus lobata HOM05D008943 ORTHO05D010477 2.7e-27 125.6 131 57.3
Haze_24168 Corylus avellana HOM05D008943 ORTHO05D010477 6.7e-26 120.9 122 57.4
Haze_24173 Corylus avellana HOM05D008943 ORTHO05D010477 6.7e-26 120.9 122 57.4
Cfa011556 Carpinus fangiana HOM05D008943 ORTHO05D010477 2.2e-24 115.9 133 54.9
TWI31G0177 Tripterygium wilfordii HOM05D008943 ORTHO05D010477 1.7e-21 106.3 122 50.8
TWI79G1516 Tripterygium wilfordii HOM05D008943 ORTHO05D010477 2.9e-21 105.5 122 50.8
Glyma.15G035400 Glycine max HOM05D008943 ORTHO05D010477 5.1e-18 94.7 131 42.0
Lj3g0000367 Lotus japonicus HOM05D008943 ORTHO05D010477 1.9e-17 92.8 117 45.3
ClCG02G019900 Citrullus lanatus HOM05D008943 ORTHO05D010477 1.3e-16 90.1 122 47.5
Prupe.6G070600 Prunus persica HOM05D008943 ORTHO05D010477 1.3e-16 90.1 130 46.2
MELO3C025891.2 Cucumis melo HOM05D008943 ORTHO05D010477 2.8e-16 89.0 122 45.1
Medtr2g097730 Medicago truncatula HOM05D008943 ORTHO05D010477 2.8e-16 89.0 112 43.8
CsaV3_7G010000 Cucumis sativus L. HOM05D008943 ORTHO05D010477 4.8e-16 88.2 122 44.3
TPR.G6894 Trifolium pratense HOM05D008943 ORTHO05D010477 8.2e-16 87.4 130 43.8
Lj3g0017475 Lotus japonicus HOM05D008943 ORTHO05D010477 1.1e-15 87.0 117 44.4
Thecc.09G315700 Theobroma cacao HOM05D014101 ORTHO05D010477 3.1e-15 85.5 137 42.3
Manes.01G169500 Manihot esculenta HOM05D008943 ORTHO05D010477 5.3e-15 84.7 149 43.6
Sabra09G0025900 Salix brachista HOM05D008943 ORTHO05D010477 9.1e-15 84.0 124 45.2
FvH4_3g36931 Fragaria vesca HOM05D008943 ORTHO05D010477 1.5e-14 83.2 117 41.9
Glyma.13G338900 Glycine max HOM05D008943 ORTHO05D010477 1.5e-14 83.2 128 43.0
Ciclev10030147m.g Citrus clementina HOM05D008943 ORTHO05D010477 5.9e-14 81.3 131 41.2
Lalb_Chr14g0372021 Lupinus albus HOM05D008943 ORTHO05D010477 5.0e-13 78.2 130 40.0
Duzib168G0546 Durio zibethinus HOM05D014101 ORTHO05D010477 1.4e-12 76.6 123 38.2
RcHm_v2.0_Chr5g0066341 Rosa chinensis HOM05D008943 ORTHO05D010477 1.9e-12 76.3 117 38.5
Potri.009G036600 Populus trichocarpa HOM05D008943 ORTHO05D010477 3.2e-12 75.5 141 39.0
Sed0005589 Sechium edule HOM05D008943 ORTHO05D010477 5.5e-12 74.7 117 42.7
Oeu054839.1 Olea europaea HOM05D008943 ORTHO05D010477 2.1e-11 72.8 122 41.0
Lsat_1_v5_gn_9_24780 Lactuca sativa HOM05D008943 ORTHO05D010477 2.7e-11 72.4 120 38.3
Cc01_g13330 Coffea canephora HOM05D008943 ORTHO05D010477 4.7e-11 71.6 139 41.0
PGSC0003DMG400030330 Solanum tuberosum HOM05D018880 ORTHO05D010477 7.9e-11 70.9 125 41.6
VMungo1080G1120 Vigna mungo HOM05D008943 ORTHO05D010477 7.9e-11 70.9 109 40.4
Nitab4.5_0006916g0040 Nicotiana tabacum HOM05D018880 ORTHO05D010477 1.0e-10 70.5 127 42.5
Nitab4.5_0000463g0120 Nicotiana tabacum HOM05D018880 ORTHO05D010477 1.8e-10 69.7 125 44.0
CANSAT54G0610 Cannabis sativa HOM05D008943 ORTHO05D010477 3.0e-10 68.9 152 34.2
Phvul.L008143 Phaseolus vulgaris HOM05D008943 ORTHO05D010477 3.9e-10 68.6 127 36.2
COL.COLO4_18576 Corchorus olitorius HOM05D014101 ORTHO05D010477 8.8e-10 67.4 117 41.9
Sed0015087 Sechium edule HOM05D008943 ORTHO05D010477 8.8e-10 67.4 120 39.2
ECA247G2559 Erigeron canadensis HOM05D008943 ORTHO05D010477 2.6e-09 65.9 102 43.1
Peaxi162Scf00481g00035 Petunia axillaris HOM05D018880 ORTHO05D010477 3.3e-09 65.5 112 39.3
Nn2g11207 Nelumbo nucifera HOM05D008943 ORTHO05D010477 5.7e-09 64.7 126 39.7
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.7e-09 63.9 112 35.7
Os03g0270800 Oryza sativa ssp. japonica HOM05D008943 ORTHO05D010477 1.3e-08 63.5 138 32.6
Sopen06g032790 Solanum pennellii HOM05D018880 ORTHO05D010477 1.3e-08 63.5 114 41.2
Zm00001eb012120 Zea mays HOM05D008943 ORTHO05D010477 1.7e-08 63.2 137 35.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.7e-08 62.0 86 40.7
Gohir.A07G100350 Gossypium hirsutum HOM05D014101 ORTHO05D010477 4.8e-08 61.6 122 35.2
Gorai.009G096600 Gossypium raimondii HOM05D014101 ORTHO05D010477 1.4e-07 60.1 134 33.6
Rhsim13G0077200 Rhododendron simsii HOM05D018880 ORTHO05D010477 1.4e-07 60.1 146 37.0
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.8e-07 59.7 101 35.6
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.1e-07 58.9 96 37.5
A10p06000 Brassica napus HOM05D010249 ORTHO05D012412 4.1e-07 58.5 131 35.9
BraA10t42862Z Brassica rapa HOM05D010249 ORTHO05D012412 4.1e-07 58.5 131 35.9
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.3e-07 58.2 115 35.7
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 7.0e-07 57.8 91 36.3
THA.LOC104826309 Tarenaya hassleriana HOM05D010249 ORTHO05D012412 7.0e-07 57.8 123 36.6
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.2e-06 57.0 92 42.4
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.5e-06 56.6 98 39.8
CARHR007230 Cardamine hirsuta HOM05D010249 ORTHO05D012412 2.0e-06 56.2 135 33.3
Gohir.A08G001300 Gossypium hirsutum HOM05D014101 ORTHO05D010477 2.0e-06 56.2 118 39.0
Gorai.004G006000 Gossypium raimondii HOM05D014101 ORTHO05D010477 2.0e-06 56.2 113 39.8
PSO063G1617 Papaver somniferum HOM05D046535 ORTHO05D050227 2.0e-06 56.2 165 32.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.6e-06 55.8 98 38.8
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 4.5e-06 55.1 101 39.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 5.9e-06 54.7 86 39.5
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 5.9e-06 54.7 94 39.4
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 7.7e-06 54.3 91 38.5
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 7.7e-06 54.3 91 40.7


User provided reference genes

Program Settings