Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-57 226.1 110 100.0
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.4e-43 177.6 93 91.4
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 8.9e-38 160.2 86 89.5
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.7e-33 146.0 76 92.1
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.0e-25 118.6 81 71.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 6.8e-22 107.5 77 68.8
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 2.0e-21 105.9 79 63.3
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.8e-21 104.4 79 60.8
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 4.9e-20 101.3 84 63.1
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.1e-19 100.1 78 61.5
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.4e-19 99.8 79 59.5
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 1.4e-19 99.8 79 60.8
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 1.9e-19 99.4 76 65.8
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 2.4e-19 99.0 78 61.5
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 3.2e-19 98.6 83 57.8
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 3.2e-19 98.6 104 49.0
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 4.6e-18 94.7 69 66.7
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.6e-18 94.7 82 58.5
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.6e-18 94.7 82 58.5
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 6.0e-18 94.4 82 58.5
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.0e-17 93.6 84 56.0
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.0e-17 93.6 78 55.1
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.3e-17 92.4 82 56.1
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 5.1e-17 91.3 79 58.2
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 8.7e-17 90.5 78 55.1
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.5e-16 89.7 78 56.4
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 2.5e-16 89.0 75 61.3
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 4.3e-16 88.2 88 48.9
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 5.6e-16 87.8 79 54.4
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 7.3e-16 87.4 76 59.2
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.2e-15 86.7 73 61.6
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.2e-15 86.7 76 53.9
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 1.6e-15 86.3 82 57.3
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.8e-15 85.5 79 53.2
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.8e-15 85.5 106 46.2
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 4.7e-15 84.7 71 56.3
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 4.7e-15 84.7 68 63.2
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.4e-14 83.2 80 55.0
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.8e-14 82.8 78 50.0
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 3.1e-14 82.0 76 59.2
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.1e-14 82.0 76 59.2
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 4.0e-14 81.6 79 51.9
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 4.0e-14 81.6 77 53.2
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 4.0e-14 81.6 74 56.8
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 6.9e-14 80.9 74 54.1
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 9.0e-14 80.5 79 53.2
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 9.0e-14 80.5 84 45.2
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.0e-14 80.5 76 57.9
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 9.0e-14 80.5 81 54.3
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.2e-13 80.1 78 53.8
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.2e-13 80.1 100 48.0
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.5e-13 79.7 80 57.5
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 2.0e-13 79.3 103 46.6
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 2.6e-13 79.0 82 57.3
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 2.6e-13 79.0 77 51.9
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.4e-13 78.6 76 57.9
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 3.4e-13 78.6 78 56.4
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 3.4e-13 78.6 87 46.0
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 4.4e-13 78.2 62 58.1
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.8e-13 77.8 76 56.6
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 7.6e-13 77.4 51 66.7
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 7.6e-13 77.4 80 50.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 9.9e-13 77.0 61 57.4
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 9.9e-13 77.0 77 54.5
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.9e-13 77.0 78 55.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 9.9e-13 77.0 67 61.2
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.3e-12 76.6 68 52.9
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.3e-12 76.6 78 55.1
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.2e-12 75.9 94 44.7
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.2e-12 75.9 67 59.7
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 2.9e-12 75.5 73 53.4
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 2.9e-12 75.5 67 58.2
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 6.4e-12 74.3 79 49.4
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 8.4e-12 73.9 79 49.4
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.1e-11 73.6 76 48.7
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.9e-11 72.8 64 59.4
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.9e-11 72.8 75 50.7
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 3.2e-11 72.0 77 45.5
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.2e-11 72.0 84 48.8
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 5.4e-11 71.2 79 50.6
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 5.4e-11 71.2 78 51.3
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 5.4e-11 71.2 76 47.4
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 7.1e-11 70.9 80 46.2
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 7.1e-11 70.9 67 58.2
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.1e-11 70.9 72 45.8
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.1e-11 70.9 72 45.8
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 7.1e-11 70.9 72 51.4
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.2e-10 70.1 82 42.7
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.2e-10 70.1 71 50.7
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.6e-10 69.7 75 50.7
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 3.5e-10 68.6 65 56.9
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 3.5e-10 68.6 78 41.0
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 4.6e-10 68.2 80 50.0
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.6e-10 68.2 75 49.3
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 6.0e-10 67.8 71 46.5
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 6.0e-10 67.8 81 46.9
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 7.8e-10 67.4 81 49.4
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 1.0e-09 67.0 78 48.7
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.7e-09 66.2 70 48.6
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 1.7e-09 66.2 84 41.7
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.7e-09 66.2 50 62.0
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 2.3e-09 65.9 63 55.6
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 3.0e-09 65.5 83 44.6
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 3.9e-09 65.1 84 45.2
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 3.9e-09 65.1 84 45.2
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.9e-09 65.1 68 51.5
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 3.9e-09 65.1 78 47.4
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 6.6e-09 64.3 77 44.2
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 8.7e-09 63.9 73 52.1
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 8.7e-09 63.9 80 42.5
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.9e-08 62.8 50 60.0
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 2.5e-08 62.4 81 44.4
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 3.3e-08 62.0 56 51.8
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 4.3e-08 61.6 44 65.9
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.3e-08 61.6 74 40.5
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 5.6e-08 61.2 68 41.2
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 7.3e-08 60.8 50 58.0
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 7.3e-08 60.8 78 41.0
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 9.6e-08 60.5 68 47.1
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 9.6e-08 60.5 81 40.7
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 1.6e-07 59.7 61 49.2
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 1.6e-07 59.7 84 45.2
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 1.6e-07 59.7 72 47.2
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 2.1e-07 59.3 83 41.0
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 2.8e-07 58.9 55 50.9
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 3.6e-07 58.5 51 54.9
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.6e-07 58.5 69 40.6
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 4.8e-07 58.2 70 42.9
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 4.8e-07 58.2 74 43.2
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 8.1e-07 57.4 49 53.1
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 8.1e-07 57.4 61 47.5
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.1e-06 57.0 56 50.0
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 1.4e-06 56.6 73 45.2
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 1.8e-06 56.2 37 64.9
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 2.4e-06 55.8 54 51.9
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.1e-06 55.5 69 50.7
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 3.1e-06 55.5 57 47.4
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 3.1e-06 55.5 53 50.9
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 3.1e-06 55.5 77 45.5
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 4.0e-06 55.1 66 51.5
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 5.3e-06 54.7 110 31.8


User provided reference genes

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