Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.0e-91 337.4 163 100.0
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.9e-84 315.8 162 90.1
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.5e-84 314.3 163 89.0
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.0e-82 308.5 163 86.5
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 8.7e-82 307.0 163 87.1
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.1e-81 306.6 163 85.9
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 2.5e-81 305.4 163 85.3
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.3e-81 304.7 163 86.5
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 4.3e-81 304.7 163 85.9
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.3e-80 303.1 163 84.7
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 4.8e-80 301.2 163 84.0
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.1e-79 300.1 163 82.8
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.4e-79 298.9 163 84.0
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.4e-79 298.9 163 84.0
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 2.4e-79 298.9 159 84.3
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.0e-77 293.5 162 81.5
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.7e-77 292.7 162 81.5
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.9e-77 292.0 163 82.2
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 3.8e-77 291.6 163 81.6
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.9e-76 289.3 163 81.6
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.6e-75 286.2 163 81.0
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.1e-75 285.8 163 77.9
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 3.5e-75 285.0 163 77.9
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.6e-75 284.6 163 78.5
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 4.6e-75 284.6 163 80.4
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.0e-74 283.5 163 77.3
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 6.7e-74 280.8 163 79.1
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 8.7e-74 280.4 151 82.8
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.1e-73 280.0 163 77.9
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 2.5e-73 278.9 163 76.7
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 3.3e-73 278.5 163 78.5
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 3.3e-73 278.5 163 78.5
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 7.4e-73 277.3 150 84.0
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 9.7e-73 276.9 148 83.1
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 9.7e-73 276.9 151 81.5
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.3e-72 276.6 163 76.7
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.6e-72 276.2 163 79.1
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 79.1
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 75.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 79.8
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 76.1
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 6.3e-72 274.2 149 83.2
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 8.2e-72 273.9 163 74.8
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 8.2e-72 273.9 163 75.5
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.1e-71 273.5 163 74.8
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 2.4e-71 272.3 163 76.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 3.1e-71 271.9 163 74.8
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 4.1e-71 271.6 163 74.2
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 4.1e-71 271.6 163 74.2
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 4.1e-71 271.6 154 79.2
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 5.3e-71 271.2 163 73.6
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 77.9
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.2e-70 270.0 163 74.2
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.2e-70 270.0 163 73.6
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.2e-70 270.0 154 77.3
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.5e-70 269.6 154 78.6
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.5e-70 269.6 163 74.8
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 73.6
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 73.6
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 72.4
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 4.5e-70 268.1 153 77.8
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 75.5
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 3.8e-69 265.0 163 74.2
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.0e-69 264.6 162 73.5
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 6.5e-69 264.2 163 75.5
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 8.5e-69 263.8 154 75.3
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-68 263.5 165 77.0
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-68 263.5 165 77.0
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.1e-68 263.5 161 73.9
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-68 263.1 165 77.0
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.9e-68 262.7 165 77.0
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.9e-68 262.7 149 78.5
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.9e-68 262.7 149 78.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.5e-68 262.3 149 79.2
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.2e-68 261.9 149 79.9
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 9.4e-68 260.4 153 75.8
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 9.4e-68 260.4 153 75.8
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.7e-67 258.8 152 78.9
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 7.9e-67 257.3 153 75.8
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.4e-66 256.5 152 75.0
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.4e-66 256.5 164 73.2
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 2.3e-66 255.8 165 74.5
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.9e-66 255.0 144 79.9
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.7e-66 254.2 148 77.0
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 6.7e-66 254.2 164 73.8
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.5e-65 253.1 164 72.0
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.5e-65 252.3 144 78.5
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 5.7e-65 251.1 165 72.1
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 7.4e-65 250.8 163 71.8
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 7.4e-65 250.8 157 70.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 9.7e-65 250.4 178 68.0
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.3e-64 250.0 165 72.1
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.7e-64 249.6 149 74.5
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.7e-64 249.6 146 75.3
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.2e-64 249.2 144 75.7
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.2e-64 249.2 144 75.7
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.8e-64 248.1 165 71.5
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.1e-63 246.9 165 70.3
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.1e-63 246.9 141 77.3
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 4.1e-63 245.0 163 69.9
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 9.1e-63 243.8 165 70.3
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 2.0e-62 242.7 160 71.2
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 3.4e-62 241.9 165 69.7
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 5.9e-62 241.1 142 76.8
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.9e-62 241.1 137 77.4
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 7.7e-62 240.7 146 74.7
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.9e-61 238.8 165 69.7
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 6.5e-61 237.7 163 66.9
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.4e-58 229.9 148 70.9
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.8e-58 229.6 162 66.7
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 3.0e-58 228.8 136 72.8
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.1e-57 226.9 124 81.5
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.0e-57 226.1 163 69.3
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 3.1e-55 218.8 146 66.4
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 8.5e-53 210.7 163 62.0
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 4.2e-52 208.4 109 86.2
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 4.7e-51 204.9 163 58.9
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.8e-50 203.0 153 65.4
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 5.2e-50 201.4 163 58.3
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.8e-45 185.3 123 72.4
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 5.5e-44 181.4 163 58.3
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.6e-43 179.9 126 68.3
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.4e-41 171.8 150 56.7
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 4.4e-41 171.8 123 64.2
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.3e-40 170.2 103 74.8
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 8.3e-40 167.5 164 52.4
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.1e-39 167.2 164 52.4
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.6e-38 163.3 176 51.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.7e-38 162.5 176 51.7
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 2.2e-37 159.5 163 50.3
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.5e-36 156.8 164 50.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.9e-36 156.4 126 58.7
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 6.8e-34 147.9 165 45.5
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 8.3e-32 141.0 90 72.2
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.7e-30 136.0 132 54.5
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.4e-26 123.6 139 44.6
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.8e-23 113.2 67 76.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 4.4e-17 92.0 63 66.7
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.3e-13 79.7 121 36.4
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 8.6e-13 77.8 62 62.9
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.1e-12 77.4 53 64.2
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.1e-10 69.3 58 56.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 8.9e-10 67.8 48 58.3
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 1.9e-07 60.1 43 65.1
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 9.2e-07 57.8 46 52.2


User provided reference genes

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