Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 4.1e-104 381.3 183 100.0
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.7e-89 332.8 183 84.7
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.7e-89 332.8 183 85.2
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.2e-82 310.1 182 79.7
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 2.8e-81 305.4 179 78.2
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 8.6e-78 293.9 182 74.2
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.9e-77 292.7 185 74.1
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 1.9e-77 292.7 183 74.3
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 1.2e-76 290.0 183 70.5
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 2.8e-76 288.9 178 74.2
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 3.6e-76 288.5 178 74.7
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 4.7e-76 288.1 176 72.7
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 6.1e-76 287.7 182 71.4
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.1e-76 287.7 182 71.4
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 6.1e-76 287.7 181 72.4
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.4e-75 286.6 177 74.0
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.4e-75 286.6 182 72.5
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 1.8e-75 286.2 183 73.8
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 3.0e-75 285.4 184 71.2
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 4.0e-75 285.0 177 71.8
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 6.8e-75 284.3 182 70.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.2e-74 283.5 185 70.8
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.5e-74 283.1 184 71.2
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 5.8e-74 281.2 185 70.8
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 5.8e-74 281.2 185 70.8
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 7.5e-74 280.8 182 68.7
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.7e-73 279.6 177 73.4
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.7e-73 279.6 177 73.4
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.7e-73 279.6 182 68.1
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.7e-73 279.6 184 68.5
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 2.2e-73 279.3 183 71.0
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 2.2e-73 279.3 185 69.7
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 3.7e-73 278.5 179 71.5
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 3.7e-73 278.5 177 71.2
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 6.4e-73 277.7 180 71.7
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 8.3e-73 277.3 179 70.4
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 1.1e-72 276.9 174 71.8
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.4e-72 276.6 188 70.2
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 2.4e-72 275.8 183 68.9
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 2.4e-72 275.8 183 67.2
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 2.4e-72 275.8 172 74.4
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.2e-72 275.4 182 68.7
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 5.4e-72 274.6 183 68.9
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 9.2e-72 273.9 174 70.1
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 9.2e-72 273.9 182 69.2
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.2e-71 273.5 183 66.7
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 2.7e-71 272.3 184 72.3
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 4.6e-71 271.6 173 71.1
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 6.0e-71 271.2 179 68.2
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 7.8e-71 270.8 180 68.9
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.3e-70 270.0 177 71.2
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.3e-70 270.0 177 70.6
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 1.3e-70 270.0 178 70.2
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.7e-70 269.6 180 69.4
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 2.3e-70 269.2 176 69.9
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 3.9e-70 268.5 176 68.2
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 6.6e-70 267.7 183 66.7
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 8.6e-70 267.3 183 65.0
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 1.5e-69 266.5 180 68.3
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 2.5e-69 265.8 179 67.6
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 4.3e-69 265.0 178 69.1
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 4.3e-69 265.0 178 68.0
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 5.6e-69 264.6 172 68.6
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 9.5e-69 263.8 171 69.0
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.2e-68 263.5 176 69.9
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 2.1e-68 262.7 180 66.7
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.1e-68 262.7 178 70.2
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 4.7e-68 261.5 176 67.0
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.1e-67 260.4 183 66.1
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 4.0e-67 258.5 165 70.3
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 4.0e-67 258.5 183 65.6
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.2e-66 256.9 177 67.8
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 1.2e-66 256.9 173 65.9
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.5e-66 256.5 175 65.1
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.0e-66 256.1 177 67.8
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 4.4e-66 255.0 179 66.5
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 4.4e-66 255.0 179 63.1
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 7.5e-66 254.2 166 70.5
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 7.5e-66 254.2 179 63.1
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 2.2e-65 252.7 180 65.0
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 8.3e-65 250.8 180 63.3
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.1e-64 250.4 166 69.3
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 7.0e-64 247.7 185 63.8
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 9.2e-64 247.3 181 60.2
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 9.2e-64 247.3 181 60.2
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 2.7e-63 245.7 175 61.7
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 2.7e-63 245.7 176 60.8
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.7e-62 243.0 176 64.2
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 2.3e-62 242.7 179 63.1
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.0e-62 242.3 155 69.0
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.5e-61 240.0 179 61.5
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.3e-61 238.4 149 71.1
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.8e-60 235.7 155 68.4
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 4.7e-60 235.0 177 58.8
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 8.1e-60 234.2 171 63.7
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 1.8e-59 233.0 176 61.4
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 4.0e-59 231.9 156 67.9
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 5.2e-59 231.5 177 62.7
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 1.2e-58 230.3 165 64.2
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.9e-57 225.7 152 70.4
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 8.3e-57 224.2 164 61.6
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.9e-56 223.0 149 67.8
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 8.9e-51 204.1 169 56.8
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 3.4e-50 202.2 155 59.4
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.7e-46 189.9 129 64.3
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.1e-45 187.2 181 47.0
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 7.3e-45 184.5 180 47.2
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 2.4e-43 179.5 175 46.9
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 4.4e-42 175.3 123 63.4
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.1e-40 170.6 118 65.3
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.2e-39 167.2 177 44.6
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 7.6e-34 147.9 178 41.0
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.2e-32 142.5 131 53.4
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 1.1e-24 117.5 75 74.7
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 5.5e-24 115.2 151 42.4
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 9.0e-19 97.8 173 34.7
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 6.5e-17 91.7 59 61.0
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.4e-16 90.5 180 35.0
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.5e-13 80.5 97 43.3
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 5.5e-08 62.0 206 25.2
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 3.9e-06 55.8 67 44.8


User provided reference genes

Program Settings