Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 6.7e-240 833.6 411 100.0
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.6e-172 609.8 363 82.4
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 8.4e-166 587.4 358 79.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 2.7e-164 582.4 358 79.1
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 8.4e-158 560.8 364 76.6
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 6.7e-147 524.6 378 67.7
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 8.2e-145 517.7 385 67.0
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 9.1e-144 514.2 385 67.3
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.4e-141 506.9 370 67.3
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.2e-141 504.6 370 67.0
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.1e-140 503.1 370 66.8
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.0e-139 500.7 370 66.5
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 2.0e-138 496.5 367 65.9
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 2.6e-138 496.1 374 67.1
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 3.7e-137 492.3 367 66.2
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.8e-137 491.9 396 62.6
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 4.8e-137 491.9 365 67.9
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 6.3e-137 491.5 364 67.3
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 6.3e-137 491.5 366 66.9
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.4e-136 490.3 357 66.7
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 1.7e-134 483.4 358 65.9
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.1e-133 480.7 366 66.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.6e-132 476.9 342 68.1
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.7e-132 475.3 375 65.3
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 6.1e-132 474.9 364 64.8
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 5.2e-131 471.9 354 65.5
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 8.8e-131 471.1 368 64.1
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.5e-130 470.3 324 70.1
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.0e-130 469.9 366 64.2
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 2.6e-130 469.5 365 65.8
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.7e-129 466.8 383 60.1
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 3.7e-129 465.7 381 60.9
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 4.8e-129 465.3 381 61.2
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 3.1e-128 462.6 374 63.9
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 5.3e-128 461.8 382 60.2
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 7.0e-128 461.5 365 64.9
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.2e-127 460.7 355 64.5
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.0e-127 459.9 365 65.2
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.0e-127 459.9 381 60.4
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.6e-127 459.5 365 63.8
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.3e-126 457.2 375 63.5
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 2.9e-126 456.1 341 65.1
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 8.5e-126 454.5 383 60.1
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.1e-125 454.1 382 59.7
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.9e-125 453.4 359 61.6
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 3.6e-124 449.1 364 61.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 5.2e-123 445.3 360 61.7
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 2.0e-122 443.4 359 63.0
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 2.6e-122 443.0 350 63.7
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 3.7e-121 439.1 364 61.0
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 1.1e-120 437.6 359 62.7
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 2.4e-120 436.4 371 60.1
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 5.9e-119 431.8 360 61.7
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 5.9e-119 431.8 353 62.3
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 2.2e-118 429.9 317 65.6
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 2.2e-118 429.9 353 61.2
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 5.0e-118 428.7 361 62.6
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-116 424.1 340 62.6
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 4.7e-116 422.2 376 58.5
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 8.0e-116 421.4 343 62.7
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 2.3e-115 419.9 371 59.0
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 6.8e-115 418.3 364 57.7
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.2e-114 417.5 347 60.5
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.5e-114 417.2 342 62.3
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.5e-114 417.2 357 59.1
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 4.4e-114 415.6 340 61.2
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 4.4e-114 415.6 323 63.5
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.3e-113 414.1 343 61.5
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 4.9e-113 412.1 433 51.3
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 5.4e-112 408.7 389 55.5
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.4e-112 408.7 280 69.6
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.7e-111 406.4 373 56.3
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 4.5e-111 405.6 376 57.4
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.0e-110 404.4 280 69.3
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 6.6e-110 401.7 340 60.9
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 8.6e-110 401.4 324 62.7
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.9e-109 400.2 291 67.0
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 3.3e-109 399.4 330 60.9
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 3.3e-109 399.4 363 56.7
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 7.2e-109 398.3 330 60.9
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 9.5e-109 397.9 367 56.9
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 3.6e-108 396.0 319 62.7
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 3.6e-108 396.0 322 62.7
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.0e-107 394.4 365 56.4
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.0e-107 394.4 330 61.2
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.8e-107 393.7 344 59.0
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.8e-107 393.7 319 62.1
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 4.0e-107 392.5 289 66.1
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 4.0e-107 392.5 333 59.5
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 8.9e-107 391.3 324 61.1
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 7.5e-106 388.3 319 62.1
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 7.5e-106 388.3 349 59.0
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.2e-105 386.7 323 61.3
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 8.3e-105 384.8 319 61.1
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 4.1e-104 382.5 318 61.3
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 9.2e-104 381.3 358 56.4
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.6e-103 380.6 361 54.8
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 4.6e-103 379.0 318 61.0
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 7.3e-101 371.7 292 64.0
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.7e-100 369.0 318 60.4
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 4.7e-100 369.0 299 61.2
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.0e-99 367.9 327 58.1
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.8e-99 367.1 346 56.4
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 8.9e-99 364.8 289 63.7
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.0e-98 363.6 300 58.3
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-97 360.5 330 57.0
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.7e-95 353.2 324 55.9
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.7e-94 350.5 283 60.4
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 3.1e-91 339.7 326 57.7
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.2e-90 337.8 273 61.9
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.9e-85 320.5 296 54.4
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.2e-84 317.8 328 50.9
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 2.2e-81 307.0 287 54.0
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 1.3e-73 281.2 262 56.9
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 4.3e-69 266.2 236 57.6
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.0e-66 257.3 190 67.4
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.1e-64 251.5 289 46.4
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 4.2e-64 249.6 294 46.3
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 8.7e-62 241.9 287 44.6
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.5e-61 241.1 300 43.0
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.3e-60 238.0 269 45.7
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.5e-58 231.1 278 43.5
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 2.2e-57 227.3 295 42.0
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.8e-54 217.6 164 64.6
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.6e-44 184.5 175 57.1
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 3.0e-38 163.7 134 60.4
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 4.8e-36 156.4 134 58.2
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 3.3e-29 133.7 92 68.5
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 7.2e-24 115.9 106 61.3
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-23 115.2 172 42.4
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 9.7e-21 105.5 122 53.3
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 9.7e-21 105.5 122 53.3
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.3e-17 95.1 77 63.6
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 1.3e-17 95.1 94 54.3
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.3e-17 95.1 86 53.5
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 9.1e-11 72.4 99 38.4
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-09 68.2 53 62.3
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-09 68.2 71 49.3
HanXRQChr05g0151741 Helianthus annuus HOM05D004293 ORTHO05D005044 2.3e-06 57.8 123 36.6
ECA246G0240 Erigeron canadensis HOM05D004293 ORTHO05D005044 5.2e-06 56.6 161 29.2
DCAR_013830 Daucus carota HOM05D004293 ORTHO05D005044 8.8e-06 55.8 125 35.2


User provided reference genes

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