Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 2.8e-149 531.9 272 100.0
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 1.7e-106 389.8 271 76.0
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 6.7e-103 377.9 275 73.1
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 1.3e-93 347.1 352 56.8
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 4.5e-91 338.6 270 69.3
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.9e-90 335.9 270 68.5
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 3.8e-90 335.5 277 68.2
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 1.1e-89 334.0 275 66.9
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 1.9e-89 333.2 276 65.2
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 3.6e-88 328.9 267 65.2
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 4.7e-88 328.6 274 64.2
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 4.7e-88 328.6 260 67.7
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 8.8e-87 324.3 274 63.1
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 2.2e-85 319.7 273 63.4
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 3.7e-85 318.9 273 64.8
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 3.7e-85 318.9 218 78.4
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 6.3e-85 318.2 236 69.9
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 6.3e-85 318.2 272 65.1
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 5.3e-84 315.1 267 64.8
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 1.2e-83 313.9 256 66.8
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 2.7e-83 312.8 271 63.5
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 7.7e-83 311.2 274 62.4
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.3e-82 310.5 250 67.6
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.7e-82 310.1 266 62.8
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 2.2e-82 309.7 271 63.1
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 1.5e-81 307.0 272 62.5
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 9.4e-81 304.3 236 68.6
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 1.6e-80 303.5 234 68.4
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 2.1e-80 303.1 255 63.9
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 2.1e-80 303.1 234 66.7
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 2.7e-80 302.8 225 70.2
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 3.6e-80 302.4 235 68.9
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 3.6e-80 302.4 234 67.5
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.1e-80 301.6 271 62.7
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.4e-79 300.4 235 68.5
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.8e-79 300.1 266 61.7
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 2.3e-79 299.7 271 62.4
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.3e-79 299.7 271 62.7
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 6.8e-79 298.1 288 59.0
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 8.8e-79 297.7 259 62.5
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 2.0e-78 296.6 277 59.2
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.0e-78 296.6 271 61.6
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 4.4e-78 295.4 271 60.1
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.3e-77 293.9 259 61.8
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 4.8e-77 292.0 273 59.0
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 6.3e-77 291.6 231 64.9
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 5.4e-76 288.5 263 60.5
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 2.7e-75 286.2 268 60.1
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.3e-74 283.9 233 66.1
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 1.7e-74 283.5 262 59.5
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 2.2e-74 283.1 264 58.7
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 3.8e-74 282.3 269 60.6
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 1.5e-73 280.4 240 64.2
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.5e-73 279.6 272 60.7
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 4.2e-73 278.9 248 62.1
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 4.2e-73 278.9 232 61.6
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.2e-72 277.3 244 62.7
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.6e-72 276.9 264 59.1
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 2.1e-72 276.6 272 59.2
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.7e-72 276.2 244 62.3
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 2.7e-72 276.2 260 60.4
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 1.4e-71 273.9 221 64.7
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.3e-71 273.1 277 57.0
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.3e-71 273.1 277 57.0
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 8.8e-71 271.2 267 58.4
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 3.4e-70 269.2 233 63.9
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 9.8e-70 267.7 261 56.3
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 2.8e-69 266.2 267 57.7
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 6.3e-69 265.0 216 65.7
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.4e-68 263.1 244 61.1
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 3.1e-68 262.7 258 57.8
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 4.1e-68 262.3 257 56.8
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 2.0e-67 260.0 287 53.7
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 2.7e-67 259.6 257 56.0
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 7.7e-67 258.1 232 60.8
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 8.6e-66 254.6 256 59.4
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 8.6e-66 254.6 270 55.2
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 2.5e-65 253.1 217 63.1
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 7.3e-65 251.5 273 53.8
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 2.3e-63 246.5 245 56.3
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 1.2e-62 244.2 224 59.4
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 1.5e-62 243.8 297 51.5
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 3.4e-62 242.7 214 63.1
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 3.4e-62 242.7 221 63.3
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 7.0e-60 235.0 226 59.3
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 2.1e-56 223.4 241 54.4
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 2.8e-56 223.0 257 51.0
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 1.4e-55 220.7 274 50.4
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 8.9e-55 218.0 220 60.0
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.7e-53 213.8 269 48.7
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 3.7e-53 212.6 362 40.9
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 4.1e-52 209.1 272 50.4
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 7.8e-51 204.9 270 47.4
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 1.3e-50 204.1 273 49.1
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 3.0e-50 203.0 284 45.8
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 3.0e-50 203.0 252 49.6
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 3.9e-50 202.6 274 47.1
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 8.6e-50 201.4 282 47.2
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 8.6e-50 201.4 282 47.2
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.5e-49 200.7 223 53.4
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 1.9e-49 200.3 284 45.4
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.9e-49 200.3 273 49.5
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.9e-49 200.3 273 49.5
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 5.6e-49 198.7 273 48.0
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 1.6e-48 197.2 242 48.8
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 2.8e-48 196.4 270 46.7
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 5.8e-46 188.7 234 49.1
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.3e-42 177.6 102 87.3
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 1.3e-42 177.6 120 75.8
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 1.7e-42 177.2 256 43.0
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 3.9e-42 176.0 153 60.8
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 9.5e-41 171.4 184 55.4
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 2.3e-39 166.8 160 57.5
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 4.3e-33 146.0 177 48.6
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 1.6e-32 144.1 176 49.4
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 8.1e-32 141.7 92 75.0
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 1.4e-31 141.0 168 50.0
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 5.2e-31 139.0 136 58.8
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 1.7e-29 134.0 186 48.9
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 7.8e-27 125.2 82 78.0
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 5.1e-26 122.5 80 77.5
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.1e-23 114.8 156 44.2
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 1.4e-20 104.4 139 45.3
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 4.2e-20 102.8 249 34.9
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 7.1e-20 102.1 86 61.6
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 7.9e-19 98.6 63 77.8
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 3.9e-18 96.3 209 36.4
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 1.6e-16 90.9 56 83.9
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 8.1e-16 88.6 63 68.3
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 4.9e-13 79.3 147 38.8
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-12 77.0 115 44.3
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 1.1e-09 68.2 81 48.1
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 2.6e-06 57.0 100 40.0


User provided reference genes

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