Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 2007.6 1011 100.0
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1714.9 1011 84.8
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1694.9 1077 80.8
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1694.5 1015 84.5
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1580.1 1011 77.6
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1575.1 1011 77.2
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1567.4 1011 77.7
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1564.3 982 79.0
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1562.7 1011 77.1
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1559.3 1013 77.0
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1556.6 1017 76.7
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1556.2 1011 76.7
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1538.5 993 76.9
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1533.1 993 76.8
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1527.3 1013 76.1
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1515.0 1012 75.0
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1512.7 1011 75.4
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1504.6 1015 75.5
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1495.7 1014 74.6
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1486.5 1010 73.5
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1483.8 1013 73.3
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1474.5 1013 73.7
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1472.6 1012 73.2
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1470.3 1014 74.0
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1468.8 1014 72.5
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1468.8 987 74.7
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1467.6 1016 72.5
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1465.7 1014 73.8
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1458.4 1001 73.1
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1455.3 1075 69.5
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1448.0 1019 71.6
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1441.0 1019 71.5
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1421.8 1014 69.9
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1421.4 1012 70.1
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1420.6 1015 69.9
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1416.7 1013 70.0
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1414.1 1015 69.4
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1412.1 1014 69.5
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1411.0 1062 68.4
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1408.7 1007 70.9
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1407.1 1014 68.6
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1403.7 1015 69.8
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1399.4 1033 69.1
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1397.1 1015 68.9
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1393.6 993 70.0
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1385.2 1015 68.4
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1372.5 1015 67.5
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1369.0 1020 68.0
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1350.1 1011 66.9
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1340.9 1012 66.4
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1332.4 1017 66.7
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1330.1 1016 66.1
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1327.8 1016 65.7
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1323.9 1013 66.6
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1321.2 1015 66.2
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1319.7 1016 66.0
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1319.7 1008 66.0
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1319.3 1014 66.0
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1309.3 1013 64.7
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1306.6 1018 64.9
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1302.0 1015 64.7
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1300.4 1016 64.9
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1299.6 1015 64.4
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1299.6 1013 65.1
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1297.7 1011 65.3
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1293.9 1015 64.3
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1292.3 1015 64.3
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1290.4 1015 64.2
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1290.4 1015 64.2
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1290.4 1015 64.3
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1286.2 1011 64.6
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1275.4 1025 63.5
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1275.0 1011 65.1
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1266.1 1020 64.3
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1258.8 1007 64.3
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1253.8 1007 64.0
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1253.4 1014 64.0
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1247.6 776 79.8
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1243.0 1011 62.9
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1229.5 1012 62.3
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1198.0 775 77.7
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1176.8 982 62.4
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1150.6 796 73.1
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 1141.3 1016 59.0
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 0.0e+00 1082.0 1018 55.1
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 3.5e-311 1071.6 1018 55.8
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 2.6e-301 1038.9 695 73.5
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 3.0e-289 998.8 594 82.5
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 9.0e-286 987.3 755 65.2
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.7e-282 975.7 976 53.9
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 3.5e-282 975.3 610 78.0
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-253 880.6 1031 47.8
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.7e-250 869.4 774 57.4
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-249 867.5 1033 47.5
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 8.8e-241 837.8 876 50.1
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 3.1e-238 829.3 996 46.8
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 5.2e-233 812.0 1008 46.1
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 6.6e-220 768.5 504 73.0
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 2.2e-215 753.4 537 69.8
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 3.1e-209 733.0 547 68.6
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 2.0e-208 730.3 453 79.9
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.3e-199 701.0 431 79.6
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.7e-189 666.8 572 61.5
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.1e-187 661.4 520 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 4.7e-186 656.0 1056 39.5
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 4.0e-185 652.9 418 79.2
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 3.9e-180 636.3 1039 39.0
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 6.4e-167 592.4 512 59.2
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.3e-159 568.2 459 61.0
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.9e-158 564.3 1020 35.3
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 2.4e-153 547.4 638 48.7
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 3.1e-153 547.0 512 56.2
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.1e-125 454.5 427 56.2
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 8.0e-117 426.0 531 46.1
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 5.2e-116 423.3 885 32.0
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.7e-115 419.9 237 86.1
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.2e-114 417.9 297 68.0
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.0e-111 409.1 266 77.8
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 4.4e-107 393.7 251 79.3
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.5e-83 315.5 456 42.8
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 8.6e-79 299.7 315 50.5
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 9.5e-78 296.2 334 48.5
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.2e-77 295.8 316 50.9
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-58 232.6 392 41.3
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 8.7e-55 219.9 363 38.8
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 2.5e-54 218.4 363 38.6
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 4.2e-49 201.1 166 64.5
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 4.2e-49 201.1 166 64.5
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 5.5e-49 200.7 109 89.0
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 2.5e-46 191.8 771 27.4
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 2.1e-45 188.7 397 35.3
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-43 183.0 393 34.4
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 4.5e-43 181.0 817 26.1
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 4.2e-41 174.5 228 44.7
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 1.6e-40 172.6 756 24.7
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-39 169.5 312 37.2
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 3.1e-36 158.3 434 29.5
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 6.1e-32 144.1 114 67.5
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 6.1e-32 144.1 161 50.3
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 3.7e-29 134.8 122 62.3
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 4.1e-28 131.3 155 46.5
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 1.2e-27 129.8 75 85.3
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.3e-26 126.3 341 28.2
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 9.4e-25 120.2 76 72.4
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 2.8e-21 108.6 164 38.4
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 1.7e-18 99.4 89 52.8
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 8.5e-18 97.1 61 78.7
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 2.1e-16 92.4 195 36.9
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-15 89.4 425 23.8
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 8.8e-15 87.0 46 87.0
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 5.7e-14 84.3 51 74.5
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 2.0e-11 75.9 49 69.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.0e-10 73.6 69 58.0
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 1.3e-10 73.2 95 42.1
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 4.7e-08 64.7 109 41.3
Peaxi162Scf00207g00840 Petunia axillaris HOM05D002927 ORTHO05D003841 2.6e-06 58.9 261 23.8
Zm00001eb159790 Zea mays HOM05D002927 ORTHO05D003841 9.7e-06 57.0 259 23.2


User provided reference genes

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