Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.6e-143 511.5 254 100.0
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.7e-100 369.8 198 96.0
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.1e-94 348.6 191 94.2
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.5e-80 303.5 253 70.0
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 7.5e-64 248.1 191 72.3
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.7e-60 236.9 190 69.5
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 3.4e-48 196.1 208 59.6
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 3.2e-46 189.5 202 58.9
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 2.6e-40 169.9 141 68.8
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.7e-37 159.8 201 53.2
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 4.0e-33 146.0 211 51.2
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 5.8e-32 142.1 202 51.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.3e-31 141.0 196 52.6
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.7e-31 140.6 202 48.5
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 1.7e-31 140.6 205 48.8
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 4.9e-31 139.0 203 47.8
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 8.4e-31 138.3 207 48.3
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 5.4e-30 135.6 198 44.9
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 7.1e-30 135.2 201 47.3
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 6.0e-29 132.1 217 47.5
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 6.0e-29 132.1 204 49.5
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.7e-28 130.6 192 50.5
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 6.6e-28 128.6 195 46.2
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 8.6e-28 128.3 192 50.0
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.1e-27 127.9 192 50.0
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.1e-27 127.9 197 46.2
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.5e-27 126.7 189 49.2
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 2.5e-27 126.7 202 45.5
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 5.6e-27 125.6 190 43.7
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 7.3e-27 125.2 201 45.8
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 7.3e-27 125.2 194 48.5
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.6e-26 124.0 220 45.5
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 4.7e-26 122.5 191 45.0
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 4.7e-26 122.5 190 43.7
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 6.2e-26 122.1 222 45.0
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 6.2e-26 122.1 222 45.0
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 6.2e-26 122.1 209 45.5
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 5.2e-25 119.0 207 43.5
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 5.2e-25 119.0 228 40.4
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 6.9e-25 118.6 195 45.1
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 2.0e-24 117.1 193 42.5
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.0e-24 117.1 200 44.5
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 7.6e-24 115.2 188 44.7
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.7e-23 114.0 196 43.4
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 2.2e-23 113.6 209 40.7
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 2.2e-23 113.6 219 44.3
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 2.9e-23 113.2 206 43.2
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 3.8e-23 112.8 186 44.6
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.9e-23 112.5 179 43.6
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 6.4e-23 112.1 161 47.8
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.1e-22 111.3 196 43.9
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.4e-22 110.9 195 45.1
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.4e-22 110.9 189 45.0
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 1.9e-22 110.5 188 45.2
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.9e-22 110.5 207 40.6
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 3.2e-22 109.8 235 38.3
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 5.4e-22 109.0 211 37.9
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 9.3e-22 108.2 231 39.0
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 9.3e-22 108.2 195 45.1
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 9.3e-22 108.2 195 43.6
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.2e-21 107.8 209 39.2
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-21 107.8 143 52.4
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-21 107.8 185 41.6
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 2.1e-21 107.1 199 43.7
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.1e-21 107.1 183 42.6
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.7e-21 106.7 223 40.4
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.6e-21 105.9 225 40.0
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 4.6e-21 105.9 183 42.6
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 6.0e-21 105.5 177 44.6
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 7.8e-21 105.1 189 42.9
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 7.8e-21 105.1 228 39.0
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 7.8e-21 105.1 207 41.1
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.0e-20 104.8 191 42.9
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.0e-20 104.8 191 42.9
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 1.0e-20 104.8 192 43.8
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.0e-20 104.8 185 41.6
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.0e-20 104.8 185 41.6
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.7e-20 104.0 178 42.1
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.7e-20 104.0 235 40.4
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.0e-20 103.2 199 44.2
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 3.9e-20 102.8 192 42.7
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 5.1e-20 102.4 178 44.4
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 6.6e-20 102.1 219 40.2
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 8.7e-20 101.7 186 40.3
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-19 101.3 187 39.0
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-19 101.3 186 40.3
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 1.9e-19 100.5 218 40.8
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 9.6e-19 98.2 212 37.3
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.6e-18 97.4 192 41.1
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.1e-18 97.1 185 43.8
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.6e-18 96.3 203 38.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 4.8e-18 95.9 220 38.2
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 4.8e-18 95.9 170 42.9
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 6.2e-18 95.5 173 42.2
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.1e-17 94.7 189 41.3
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.1e-17 94.7 211 37.9
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.1e-17 94.7 204 39.7
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.1e-17 94.7 204 38.2
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 2.4e-17 93.6 165 41.2
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.4e-17 93.6 193 38.3
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 4.0e-17 92.8 188 39.4
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 6.9e-17 92.0 187 41.2
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 6.9e-17 92.0 198 37.9
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.9e-17 92.0 212 39.6
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 6.9e-17 92.0 211 36.0
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 9.0e-17 91.7 198 37.9
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 9.0e-17 91.7 201 40.8
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 2.0e-16 90.5 191 37.7
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.0e-16 90.5 211 39.8
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 7.6e-16 88.6 141 46.1
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.3e-15 87.8 211 37.9
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 2.9e-15 86.7 89 58.4
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.9e-15 86.7 207 36.2
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 6.4e-15 85.5 203 42.4
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.4e-15 85.5 133 46.6
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.1e-14 84.7 207 37.2
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.4e-14 84.3 192 35.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.4e-14 84.3 213 38.5
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.2e-14 83.2 220 35.0
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 3.2e-14 83.2 207 36.7
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.2e-14 83.2 201 37.8
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 7.1e-14 82.0 209 35.4
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.1e-13 80.5 89 53.9
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 7.9e-13 78.6 161 37.3
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.0e-12 78.2 196 35.2
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.0e-12 78.2 178 37.6
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 2.3e-12 77.0 211 33.6
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 5.1e-12 75.9 207 35.3
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 6.7e-12 75.5 216 32.9
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.5e-11 74.3 181 34.8
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.9e-11 73.9 205 36.6
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 2.5e-11 73.6 211 33.6
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 3.3e-11 73.2 193 31.6
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 4.3e-11 72.8 77 53.2
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 4.3e-11 72.8 207 31.4
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 9.6e-11 71.6 193 34.2
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 4.8e-10 69.3 74 50.0
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 6.2e-10 68.9 188 36.7
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 8.1e-10 68.6 160 40.0
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.4e-09 67.8 73 50.7
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.8e-09 67.4 207 31.9
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 2.4e-09 67.0 75 49.3
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 6.9e-09 65.5 124 40.3
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.2e-08 64.7 203 29.6
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.2e-08 64.7 81 48.1
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 1.5e-08 64.3 197 28.4
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 2.0e-08 63.9 61 59.0
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 2.6e-08 63.5 105 40.0
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 9.9e-08 61.6 207 33.3
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.4e-06 57.8 65 49.2
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 7.1e-06 55.5 218 31.2


User provided reference genes

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