Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1875.9 1021 100.0
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1609.7 1026 86.4
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1590.5 1029 85.6
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1497.6 1028 80.4
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1491.1 1023 77.5
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1486.5 1024 77.0
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1469.1 1025 78.3
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1459.5 1022 77.6
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1456.4 1025 76.6
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1455.3 1024 75.6
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1452.2 1022 76.6
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1451.8 1026 75.7
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1450.6 1026 75.4
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1442.9 1056 75.9
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1429.5 1033 73.7
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1427.9 1034 73.7
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1427.9 1029 74.2
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1422.5 1060 74.0
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1421.4 1033 73.0
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1420.6 1030 73.1
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1420.6 1031 73.6
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1416.4 1027 73.9
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1414.4 1022 73.0
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1413.3 1018 73.9
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1413.3 1022 73.0
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1411.4 1027 74.6
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1411.0 1022 73.1
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1408.3 1022 74.6
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1407.5 1025 75.4
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1406.7 1020 75.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1402.9 1022 74.8
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1401.3 1022 74.9
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1393.3 1025 74.2
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1389.0 1024 74.6
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1389.0 1023 73.4
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1387.1 1030 73.2
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1381.7 1017 74.3
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1380.5 1022 73.7
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1379.8 1038 72.6
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1379.8 1022 71.9
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1376.7 1022 73.3
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1375.5 1022 72.6
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1371.7 1026 72.1
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1370.5 1025 72.8
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1367.1 1023 71.5
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1366.7 1007 73.6
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1349.7 1033 71.6
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1348.2 1022 69.8
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1343.9 1031 69.5
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1340.1 974 72.7
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1338.9 1091 68.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1337.4 1061 69.0
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1335.9 1023 71.7
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1332.4 1022 71.3
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1322.4 1012 72.3
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1319.3 1026 69.0
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1315.1 1021 68.6
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1311.6 1023 72.4
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1306.6 1041 69.4
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1304.7 1026 67.8
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1304.3 1026 68.3
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1303.1 1029 69.2
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1302.0 1041 67.4
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1301.6 1027 68.0
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1301.2 1022 67.8
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1300.4 1026 67.6
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1299.6 1026 67.7
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1299.3 1027 68.0
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1298.9 1027 68.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1297.3 1021 70.6
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1294.6 1045 68.2
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1293.5 1026 67.5
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1293.1 1027 67.6
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1293.1 1025 67.5
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1292.3 1029 68.7
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1288.9 1021 67.2
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1288.5 1021 67.2
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1288.1 1024 67.2
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1286.9 1022 70.7
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1283.1 975 69.9
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1283.1 1014 66.9
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1276.5 1022 69.7
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1275.0 1019 66.2
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1270.4 955 70.5
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1264.2 1025 68.5
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1262.3 1030 68.9
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1261.5 1071 64.2
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1259.2 948 70.0
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1255.4 940 69.8
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1254.6 976 68.2
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1253.0 1022 67.2
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1252.7 1004 67.4
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1233.4 1059 63.7
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1233.4 990 66.4
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1228.4 1024 66.3
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1226.1 1037 64.9
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1217.2 958 66.6
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1216.4 903 72.4
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1210.7 792 83.1
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1193.3 1030 64.2
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1181.0 795 78.1
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1164.8 855 70.9
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1161.0 789 80.2
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1145.6 1032 61.3
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1094.3 961 59.8
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1079.3 1028 58.4
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.0e-300 1036.9 708 79.8
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 2.7e-290 1002.3 956 56.4
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.4e-289 1000.0 997 53.5
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.0e-288 996.1 964 52.6
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.2e-285 986.9 954 55.5
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 2.5e-283 979.2 838 63.6
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.4e-273 946.8 749 72.2
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.7e-263 913.3 986 50.7
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.8e-257 893.3 650 74.6
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 3.1e-233 812.8 987 47.1
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 9.9e-232 807.7 615 73.2
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.1e-230 802.4 618 72.5
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 2.5e-211 740.0 969 49.1
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 7.9e-205 718.4 631 66.1
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 5.6e-203 712.2 563 64.3
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.3e-199 701.0 688 52.6
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.6e-197 694.1 543 70.0
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.8e-186 656.8 603 58.2
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 6.9e-185 652.1 1023 43.9
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.3e-163 580.1 570 55.3
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 7.0e-153 545.8 618 49.2
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.8e-146 523.9 1050 34.1
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 2.0e-139 501.1 1005 31.7
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-138 498.0 582 52.2
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 7.3e-134 482.6 382 70.9
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.1e-124 452.2 408 58.3
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 5.1e-119 433.3 981 31.2
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 6.8e-116 422.9 346 67.1
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.6e-112 411.8 290 74.5
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 7.8e-104 382.9 276 74.3
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 7.8e-104 382.9 351 57.5
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.5e-102 377.9 277 75.5
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.1e-97 362.5 405 48.4
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.9e-97 361.7 299 64.5
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 5.4e-97 360.1 303 64.4
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 9.3e-97 359.4 573 43.1
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.0e-96 356.7 562 42.0
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 1.3e-95 355.5 571 42.2
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 4.2e-89 334.0 265 66.4
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 6.4e-82 310.1 403 48.6
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.4e-82 309.7 299 60.5
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.2e-74 285.0 220 66.4
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.4e-73 282.3 189 77.2
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.7e-71 273.5 242 64.9
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 9.7e-70 269.6 267 59.6
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.1e-68 264.6 425 43.5
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.9e-67 260.4 586 34.0
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 3.3e-62 244.6 244 54.1
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.3e-61 242.7 219 56.6
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 9.1e-60 236.5 430 41.2
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.2e-59 236.1 294 49.0
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 1.9e-57 228.8 449 39.6
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.2e-56 226.1 225 58.2
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 8.5e-50 203.4 154 72.1
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.2e-49 201.1 163 68.1
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 6.7e-47 193.7 205 53.7
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.3e-45 189.5 135 71.9
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 9.7e-38 163.3 237 42.6
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.3e-37 162.9 124 78.2
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 8.3e-37 160.2 337 35.9
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.7e-35 155.2 487 32.9
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.7e-35 155.2 180 53.9
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 1.5e-33 149.4 92 75.0
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 4.2e-33 147.9 135 60.0
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.0e-30 139.0 160 51.2
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 9.5e-25 120.2 74 75.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 9.5e-25 120.2 74 75.7
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 2.8e-24 118.6 168 45.8
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 1.4e-23 116.3 172 42.4
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 8.9e-23 113.6 81 67.9
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.0e-22 112.5 66 81.8
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 2.8e-21 108.6 121 47.9
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.5e-17 95.5 163 41.1
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 8.9e-15 87.0 171 39.8
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 5.6e-09 67.8 53 66.0
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 4.7e-08 64.7 161 32.9
Actinidia23183 Actinidia chinensis HOM05D003801 ORTHO05D057972 9.8e-06 57.0 54 55.6


User provided reference genes

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