Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G065900 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.6e-110 402.1 214 100.0
CiPaw.14G052400 Carya illinoinensis HOM05D002277 ORTHO05D001770 6.4e-40 168.3 225 56.0
Cfa011806 Carpinus fangiana HOM05D002277 ORTHO05D001770 2.3e-29 133.3 228 48.7
Potri.019G127400 Populus trichocarpa HOM05D002277 ORTHO05D001770 6.6e-29 131.7 222 49.5
Potri.013G156100 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.5e-28 130.6 221 48.9
Sabra13G0126000 Salix brachista HOM05D002277 ORTHO05D001770 1.2e-25 120.9 222 47.7
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 4.4e-25 119.0 216 44.9
Hma1.2p1_2270F.1_g318540 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 5.8e-25 118.6 218 46.3
Sabra19G0129800 Salix brachista HOM05D002277 ORTHO05D001770 2.4e-23 113.2 203 46.8
Sabra19G0125500 Salix brachista HOM05D002277 ORTHO05D001770 5.4e-23 112.1 200 47.5
Actinidia34486 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.7e-22 109.8 199 45.2
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.9e-20 103.6 207 44.4
Cpa.g.sc2.326 Carica papaya HOM05D002277 ORTHO05D001770 5.6e-20 102.1 218 44.0
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 1.6e-19 100.5 209 43.1
Manes.18G140500 Manihot esculenta HOM05D002277 ORTHO05D001770 4.7e-19 99.0 174 46.6
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 6.2e-19 98.6 210 45.2
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 6.2e-19 98.6 207 44.9
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 8.1e-19 98.2 207 46.4
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.3e-18 96.7 207 45.9
Rhsim01G0241900 Rhododendron simsii HOM05D002277 ORTHO05D001770 8.9e-18 94.7 200 37.5
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 3.4e-17 92.8 199 44.7
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 7.6e-17 91.7 208 39.9
Oeu011363.1 Olea europaea HOM05D002277 ORTHO05D001770 2.9e-16 89.7 183 42.6
Atru.chr1.2541 Acer truncatum HOM05D002277 ORTHO05D001770 6.4e-16 88.6 225 40.9
Ciclev10002474m.g Citrus clementina HOM05D002277 ORTHO05D001770 1.1e-15 87.8 213 41.3
Oeu027170.1 Olea europaea HOM05D002277 ORTHO05D001770 1.9e-15 87.0 216 42.1
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.9e-15 87.0 204 40.2
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 2.4e-15 86.7 207 44.4
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 3.2e-15 86.3 206 43.2
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 3.2e-15 86.3 206 43.7
QL01p025249 Quercus lobata HOM05D002277 ORTHO05D001770 4.1e-15 85.9 182 43.4
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.4e-15 85.5 206 42.7
Lalb_Chr10g0103731 Lupinus albus HOM05D002277 ORTHO05D001770 5.4e-15 85.5 226 39.8
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 5.4e-15 85.5 204 40.7
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.2e-14 84.3 212 37.7
THA.LOC104800781 Tarenaya hassleriana HOM05D010829 ORTHO05D001770 1.2e-14 84.3 185 39.5
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.6e-14 84.0 137 46.0
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 2.1e-14 83.6 197 42.6
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 2.7e-14 83.2 175 45.1
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 3.5e-14 82.8 193 44.0
MBI15_g33145_MAGBIO Magnolia biondii HOM05D002277 ORTHO05D001770 3.5e-14 82.8 206 38.3
TWI31G1041 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 4.6e-14 82.4 178 43.3
COL.COLO4_11188 Corchorus olitorius HOM05D002277 ORTHO05D001770 6.0e-14 82.0 221 38.5
Prupe.6G043800 Prunus persica HOM05D002277 ORTHO05D001770 6.0e-14 82.0 188 41.5
Gohir.A03G023900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.8e-14 81.6 198 37.4
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 1.0e-13 81.3 195 39.0
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.0e-13 81.3 138 44.9
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 1.0e-13 81.3 204 37.7
TWI77G0059 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 1.0e-13 81.3 162 42.0
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.3e-13 80.9 135 47.4
Gohir.D03G144700 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.7e-13 80.5 197 37.6
RcHm_v2.0_Chr5g0072421 Rosa chinensis HOM05D002277 ORTHO05D001770 2.3e-13 80.1 190 41.6
Haze_24445 Corylus avellana HOM05D002277 ORTHO05D001770 3.0e-13 79.7 114 58.8
Gorai.003G151900 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.1e-13 79.0 197 37.6
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 5.1e-13 79.0 207 39.1
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 5.1e-13 79.0 201 39.8
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 1.9e-12 77.0 201 38.8
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 3.3e-12 76.3 123 50.4
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 3.3e-12 76.3 123 50.4
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 3.3e-12 76.3 123 50.4
Nitab4.5_0001234g0090 Nicotiana tabacum HOM05D002277 ORTHO05D001770 4.3e-12 75.9 201 37.8
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 7.3e-12 75.1 174 41.4
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 7.3e-12 75.1 204 37.3
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 7.3e-12 75.1 202 36.1
TPR.G25757 Trifolium pratense HOM05D002277 ORTHO05D001770 7.3e-12 75.1 190 35.8
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.6e-12 74.7 110 49.1
Medtr5g075040 Medicago truncatula HOM05D002277 ORTHO05D001770 1.6e-11 73.9 184 41.8
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.6e-11 73.9 202 41.1
TWI31G0347 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 2.8e-11 73.2 167 43.1
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 3.6e-11 72.8 191 38.7
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 3.6e-11 72.8 206 36.9
Glyma.02G234700 Glycine max HOM05D002277 ORTHO05D001770 3.6e-11 72.8 217 35.0
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 4.7e-11 72.4 189 40.2
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 6.2e-11 72.0 207 39.6
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 8.1e-11 71.6 207 37.7
Phvul.008G086700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 8.1e-11 71.6 185 37.3
ECA248G3276 Erigeron canadensis HOM05D002277 ORTHO05D001770 1.1e-10 71.2 199 36.2
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.4e-10 70.9 200 38.0
VMungo0647G0196 Vigna mungo HOM05D002277 ORTHO05D001770 1.4e-10 70.9 214 35.5
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.8e-10 70.5 110 49.1
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 2.4e-10 70.1 149 41.6
Lj2P1099T14 Lonicera japonica HOM05D002277 ORTHO05D001770 2.4e-10 70.1 216 37.5
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 2.4e-10 70.1 173 38.7
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 3.1e-10 69.7 184 40.2
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.1e-10 69.7 194 37.1
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 3.1e-10 69.7 164 42.7
Peaxi162Scf01078g00031 Petunia axillaris HOM05D002277 ORTHO05D001770 3.1e-10 69.7 197 38.6
Phvul.008G249000 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 3.1e-10 69.7 209 32.5
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 4.0e-10 69.3 202 38.6
Lsat_1_v5_gn_5_175260 Lactuca sativa HOM05D002277 ORTHO05D001770 4.0e-10 69.3 193 36.8
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 4.0e-10 69.3 191 34.6
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 4.0e-10 69.3 208 36.1
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 4.0e-10 69.3 101 47.5
Sed0018093 Sechium edule HOM05D002277 ORTHO05D001770 4.0e-10 69.3 176 31.2
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 5.2e-10 68.9 207 40.6
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.2e-10 68.9 207 40.6
Lalb_Chr17g0345561 Lupinus albus HOM05D002277 ORTHO05D001770 6.9e-10 68.6 220 34.5
Ciclev10012858m.g Citrus clementina HOM05D002277 ORTHO05D001770 8.9e-10 68.2 210 39.0
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 8.9e-10 68.2 203 37.9
LjContig00141g0024890 Lotus japonicus HOM05D002277 ORTHO05D001770 1.5e-09 67.4 221 37.6
Glyma.18G211300 Glycine max HOM05D002277 ORTHO05D001770 2.0e-09 67.0 182 38.5
AT1G06930 Arabidopsis thaliana HOM05D010829 ORTHO05D001770 2.6e-09 66.6 185 38.4
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 2.6e-09 66.6 217 34.1
CiPaw.10G163800 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.6e-09 66.6 190 36.8
MELO3C020502.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.6e-09 66.6 185 35.1
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.6e-09 66.6 172 37.8
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 4.4e-09 65.9 215 37.2
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 4.4e-09 65.9 83 53.0
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.4e-09 65.9 99 49.5
Psat2g051880 Pisum sativum HOM05D002277 ORTHO05D001770 4.4e-09 65.9 203 37.4
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 9.9e-09 64.7 212 38.2
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 1.3e-08 64.3 120 44.2
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.3e-08 64.3 191 36.1
TAR287G0001 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.3e-08 64.3 194 34.0
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 1.3e-08 64.3 179 35.2
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.7e-08 63.9 99 47.5
Thhalv10008904m.g Eutrema salsugineum HOM05D010829 ORTHO05D001770 2.2e-08 63.5 190 36.3
Sp1g05650 Schrenkiella parvula HOM05D010829 ORTHO05D001770 2.2e-08 63.5 183 37.2
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 2.2e-08 63.5 199 36.2
EL10Ac7g17051 Beta vulgaris HOM05D002277 ORTHO05D001770 2.9e-08 63.2 200 34.0
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 3.8e-08 62.8 90 51.1
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.8e-08 62.8 119 45.4
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 4.9e-08 62.4 190 35.3
CsaV3_1G036680 Cucumis sativus L. HOM05D002277 ORTHO05D001770 4.9e-08 62.4 181 32.0
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 8.4e-08 61.6 88 50.0
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.4e-08 61.6 206 40.3
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 8.4e-08 61.6 199 38.2
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 1.1e-07 61.2 197 36.5
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 1.1e-07 61.2 192 35.9
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 1.9e-07 60.5 212 35.8
Glyma.09G277500 Glycine max HOM05D002277 ORTHO05D001770 1.9e-07 60.5 168 38.1
Medtr7g072540 Medicago truncatula HOM05D002277 ORTHO05D001770 1.9e-07 60.5 107 41.1
Psat7g229920 Pisum sativum HOM05D002277 ORTHO05D001770 1.9e-07 60.5 176 38.1
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 1.9e-07 60.5 192 35.9
ClCG03G000230 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.4e-07 60.1 186 36.0
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 2.4e-07 60.1 157 39.5
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 2.4e-07 60.1 196 35.2
Aa31LG1G7990 Aethionema arabicum HOM05D010829 ORTHO05D001770 3.2e-07 59.7 174 33.3
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 3.2e-07 59.7 134 46.3
FAN25G3585 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.2e-07 59.7 161 42.9
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.2e-07 59.7 99 46.5
Oeu003236.1 Olea europaea HOM05D002277 ORTHO05D001770 3.2e-07 59.7 138 42.8
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 3.2e-07 59.7 127 46.5
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 4.2e-07 59.3 122 43.4
A10p05470 Brassica napus HOM05D010829 ORTHO05D001770 5.4e-07 58.9 182 31.9
BraA10t42810Z Brassica rapa HOM05D010829 ORTHO05D001770 5.4e-07 58.9 182 31.9
FAN11G2787 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.4e-07 58.9 185 40.0
FAN16G0709 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.4e-07 58.9 185 40.0
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 5.4e-07 58.9 196 33.2
Ah.08g209750 Amaranthus hybridus HOM05D002277 ORTHO05D001770 7.1e-07 58.5 190 31.6
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 7.1e-07 58.5 121 40.5
Ca_24067_v3 Cicer arietinum L. HOM05D002277 ORTHO05D001770 7.1e-07 58.5 190 36.8
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 9.3e-07 58.2 224 34.8
BcaC05g24659 Brassica carinata HOM05D010829 ORTHO05D001770 9.3e-07 58.2 90 44.4
C05p05040 Brassica napus HOM05D010829 ORTHO05D001770 9.3e-07 58.2 90 44.4
BolC5t29276H Brassica oleracea HOM05D010829 ORTHO05D001770 9.3e-07 58.2 90 44.4
FAN21G1843 Fragaria x ananassa HOM05D002277 ORTHO05D001770 9.3e-07 58.2 152 44.7
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 9.3e-07 58.2 159 39.0
Lalb_Chr19g0124091 Lupinus albus HOM05D002277 ORTHO05D001770 1.2e-06 57.8 173 37.6
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.2e-06 57.8 119 42.0
PGSC0003DMG400029071 Solanum tuberosum HOM05D002277 ORTHO05D001770 1.2e-06 57.8 154 36.4
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 1.2e-06 57.8 115 42.6
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 1.6e-06 57.4 226 33.6
Oeu064877.1 Olea europaea HOM05D002277 ORTHO05D001770 1.6e-06 57.4 105 41.9
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.6e-06 57.4 150 41.3
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 2.1e-06 57.0 139 40.3
Sc12g0000180 Simmondsia chinensis HOM05D002277 ORTHO05D001770 2.1e-06 57.0 191 40.8
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 2.7e-06 56.6 129 41.1
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 2.7e-06 56.6 98 44.9
AL1G16960 Arabidopsis lyrata HOM05D010829 ORTHO05D001770 3.5e-06 56.2 186 34.4
Lj3g0001226 Lotus japonicus HOM05D002277 ORTHO05D001770 3.5e-06 56.2 185 36.8
Lalb_Chr07g0190701 Lupinus albus HOM05D002277 ORTHO05D001770 3.5e-06 56.2 107 39.3
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 3.5e-06 56.2 111 42.3
BcaC07g42035 Brassica carinata HOM05D010829 ORTHO05D001770 4.6e-06 55.8 122 41.0
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 4.6e-06 55.8 148 40.5
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 4.6e-06 55.8 195 35.9
Medtr4g029130 Medicago truncatula HOM05D002277 ORTHO05D001770 4.6e-06 55.8 177 37.9
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 4.6e-06 55.8 208 29.8
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 6.0e-06 55.5 110 40.9
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 6.0e-06 55.5 110 45.5
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 6.0e-06 55.5 189 37.0
HPP92_011988 Vanilla planifolia HOM05D002277 ORTHO05D001770 6.0e-06 55.5 100 39.0
CANSAT54G0878 Cannabis sativa HOM05D002277 ORTHO05D001770 7.8e-06 55.1 218 33.0
SalBow3G1041 Salvia bowleyana HOM05D002277 ORTHO05D001770 7.8e-06 55.1 186 33.3


User provided reference genes

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