Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 5.6e-26 120.2 60 100.0
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 5.2e-16 87.0 64 73.4
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 4.9e-14 80.5 66 66.7
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 3.0e-11 71.2 62 54.8
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 3.9e-11 70.9 56 60.7
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 5.1e-11 70.5 58 58.6
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 6.6e-11 70.1 56 60.7
QL09p041996 Quercus lobata HOM05D031581 ORTHO05D008881 8.6e-11 69.7 58 62.1
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.1e-10 69.3 62 56.5
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.1e-10 69.3 56 60.7
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 9.5e-10 66.2 58 56.9
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.2e-09 65.9 53 58.5
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.6e-09 65.5 58 58.6
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.6e-09 65.5 53 58.5
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.1e-09 65.1 59 54.2
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 6.2e-09 63.5 58 53.4
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 6.2e-09 63.5 54 59.3
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 8.1e-09 63.2 65 52.3
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 2.3e-08 61.6 53 58.5
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 2.3e-08 61.6 53 56.6
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 2.3e-08 61.6 53 56.6
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 2.3e-08 61.6 53 56.6
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 3.1e-08 61.2 56 53.6
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 4.0e-08 60.8 59 54.2
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 4.0e-08 60.8 57 56.1
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 4.0e-08 60.8 45 57.8
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 6.8e-08 60.1 54 53.7
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 6.8e-08 60.1 40 67.5
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 8.9e-08 59.7 54 55.6
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.2e-07 59.3 43 62.8
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 1.5e-07 58.9 52 57.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.5e-07 58.9 55 60.0
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.5e-07 58.9 55 60.0
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 1.5e-07 58.9 54 53.7
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 2.0e-07 58.5 51 52.9
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.0e-07 58.5 59 50.8
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.0e-07 58.5 51 54.9
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 2.0e-07 58.5 51 54.9
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 2.0e-07 58.5 54 57.4
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.6e-07 58.2 40 65.0
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.4e-07 57.4 51 52.9
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 5.8e-07 57.0 57 50.9
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 5.8e-07 57.0 42 59.5
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 7.6e-07 56.6 65 52.3
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 7.6e-07 56.6 59 49.2
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 9.9e-07 56.2 58 48.3
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 9.9e-07 56.2 40 62.5
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 9.9e-07 56.2 55 54.5
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 9.9e-07 56.2 59 49.2
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 9.9e-07 56.2 59 49.2
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.3e-06 55.8 54 51.9
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 1.7e-06 55.5 53 50.9
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 2.2e-06 55.1 54 50.0
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 2.9e-06 54.7 44 52.3
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 3.7e-06 54.3 41 58.5
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 4.9e-06 53.9 63 49.2
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 6.4e-06 53.5 64 46.9
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 6.4e-06 53.5 52 51.9
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 8.4e-06 53.1 60 45.0
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 8.4e-06 53.1 35 65.7


User provided reference genes

Program Settings