Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G061300 Carya illinoinensis HOM05D007102 ORTHO05D008950 4.9e-60 234.2 112 100.0
CiPaw.13G061600 Carya illinoinensis HOM05D007102 ORTHO05D008950 3.1e-30 135.2 167 47.9
QL01p023619 Quercus lobata HOM05D007102 ORTHO05D008950 6.1e-18 94.4 164 36.6
CANSAT54G0300 Cannabis sativa HOM05D007102 ORTHO05D008950 3.0e-17 92.0 42 97.6
Lalb_Chr20g0117241 Lupinus albus HOM05D007102 ORTHO05D008950 3.0e-17 92.0 42 97.6
TWI31G0907 Tripterygium wilfordii HOM05D007102 ORTHO05D008950 3.0e-17 92.0 42 97.6
Cpa.g.sc2.262 Carica papaya HOM05D007102 ORTHO05D008950 4.0e-17 91.7 42 92.9
Thecc.09G366000 Theobroma cacao HOM05D007102 ORTHO05D008950 6.7e-17 90.9 42 95.2
Ca_15087_v3 Cicer arietinum L. HOM05D007102 ORTHO05D008950 1.2e-16 90.1 42 95.2
Duzib168G2173 Durio zibethinus HOM05D007102 ORTHO05D008950 1.2e-16 90.1 42 95.2
Manes.18G123900 Manihot esculenta HOM05D007102 ORTHO05D008950 1.2e-16 90.1 42 95.2
Medtr3g062890 Medicago truncatula HOM05D007102 ORTHO05D008950 1.2e-16 90.1 42 95.2
Sed0015928 Sechium edule HOM05D007102 ORTHO05D008950 1.2e-16 90.1 42 95.2
TPR.G13817 Trifolium pratense HOM05D007102 ORTHO05D008950 1.2e-16 90.1 42 95.2
Cfa011824 Carpinus fangiana HOM05D007102 ORTHO05D008950 2.6e-16 89.0 42 95.2
Haze_24461 Corylus avellana HOM05D007102 ORTHO05D008950 2.6e-16 89.0 42 95.2
PGR042G3056 Punica granatum HOM05D007102 ORTHO05D008950 2.6e-16 89.0 42 90.5
THA.LOC104819153 Tarenaya hassleriana HOM05D007102 ORTHO05D008950 2.6e-16 89.0 42 92.9
MELO3C019595.2 Cucumis melo HOM05D007102 ORTHO05D008950 3.3e-16 88.6 42 95.2
CsaV3_6G013250 Cucumis sativus L. HOM05D007102 ORTHO05D008950 3.3e-16 88.6 42 95.2
Atru.chr10.2354 Acer truncatum HOM05D007102 ORTHO05D008950 4.4e-16 88.2 42 92.9
CAN.G749.40 Capsicum annuum HOM05D007102 ORTHO05D008950 4.4e-16 88.2 42 92.9
Psat5g145240 Pisum sativum HOM05D007102 ORTHO05D008950 4.4e-16 88.2 41 95.1
Sabra13G0128500 Salix brachista HOM05D007102 ORTHO05D008950 4.4e-16 88.2 42 92.9
Solyc09g083150.4 Solanum lycopersicum HOM05D007102 ORTHO05D008950 4.4e-16 88.2 42 92.9
Sopen09g032040 Solanum pennellii HOM05D007102 ORTHO05D008950 4.4e-16 88.2 42 92.9
BcaB01g04483 Brassica carinata HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 90.5
BcaB01g04537 Brassica carinata HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 92.9
BcaB01g04546 Brassica carinata HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 92.9
A03p12340 Brassica napus HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 92.9
C03p14490 Brassica napus HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 92.9
BolC3t13892H Brassica oleracea HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 92.9
BraA03t10546Z Brassica rapa HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 92.9
Migut.D00799 Erythranthe guttata HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 90.5
FvH4_3g41140 Fragaria vesca HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 95.2
FAN16G1418 Fragaria x ananassa HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 95.2
FAN21G1718 Fragaria x ananassa HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 95.2
FAN25G2933 Fragaria x ananassa HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 95.2
HanXRQChr16g0508431 Helianthus annuus HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 90.5
Lsat_1_v5_gn_8_99200 Lactuca sativa HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 90.5
RcHm_v2.0_Chr5g0073911 Rosa chinensis HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 95.2
Sp6g19920 Schrenkiella parvula HOM05D007102 ORTHO05D008950 5.7e-16 87.8 42 90.5
ClCG02G018940 Citrullus lanatus HOM05D007102 ORTHO05D008950 7.5e-16 87.4 42 92.9
Dinv12295 Davidia involucrata HOM05D007102 ORTHO05D008950 7.5e-16 87.4 42 92.9
Eucgr.J01847 Eucalyptus grandis HOM05D007102 ORTHO05D008950 7.5e-16 87.4 41 95.1
CARHR272050 Cardamine hirsuta HOM05D007102 ORTHO05D008950 9.7e-16 87.0 42 88.1
Ciclev10002429m.g Citrus clementina HOM05D007102 ORTHO05D008950 9.7e-16 87.0 42 92.9
Glyma.11G201200 Glycine max HOM05D007102 ORTHO05D008950 9.7e-16 87.0 41 92.7
Glyma.18G049600 Glycine max HOM05D007102 ORTHO05D008950 9.7e-16 87.0 41 92.7
PGSC0003DMG400006084 Solanum tuberosum HOM05D007102 ORTHO05D008950 9.7e-16 87.0 42 90.5
AL8G34360 Arabidopsis lyrata HOM05D007102 ORTHO05D008950 1.3e-15 86.7 42 88.1
CSS0027114 Camellia sinensis var. sinensis HOM05D007102 ORTHO05D008950 1.3e-15 86.7 42 90.5
Carub.0008s1880 Capsella rubella HOM05D007102 ORTHO05D008950 1.3e-15 86.7 42 88.1
Aqoxy5G01440 Aquilegia oxysepala HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
arahy.Tifrunner.gnm1.ann1.6T6LBL Arachis hypogaea HOM05D007102 ORTHO05D008950 1.7e-15 86.3 43 88.4
MSTRG.21273 Avicennia marina HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
CDE07G1209 Ceratophyllum demersum HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
MBI15_g05591_MAGBIO Magnolia biondii HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
Nitab4.5_0001856g0010 Nicotiana tabacum HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
Nitab4.5_0007585g0040 Nicotiana tabacum HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
Peaxi162Scf00788g00047 Petunia axillaris HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
Potri.013G160600 Populus trichocarpa HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
GSVIVG01024526001 Vitis vinifera HOM05D007102 ORTHO05D008950 1.7e-15 86.3 42 90.5
Aa31LG11G50 Aethionema arabicum HOM05D007102 ORTHO05D008950 2.2e-15 85.9 40 92.5
AT5G58260 Arabidopsis thaliana HOM05D007102 ORTHO05D008950 2.2e-15 85.9 42 88.1
DCAR_021104 Daucus carota HOM05D007102 ORTHO05D008950 2.2e-15 85.9 42 88.1
ECA236G5009 Erigeron canadensis HOM05D007102 ORTHO05D008950 2.2e-15 85.9 41 90.2
Hma1.2p1_0170F.1_g075400 Hydrangea macrophylla HOM05D007102 ORTHO05D008950 2.2e-15 85.9 42 88.1
Nn2g10214 Nelumbo nucifera HOM05D007102 ORTHO05D008950 2.2e-15 85.9 42 88.1
Gohir.A13G016100 Gossypium hirsutum HOM05D007102 ORTHO05D008950 2.8e-15 85.5 41 87.8
Gohir.D13G017200 Gossypium hirsutum HOM05D007102 ORTHO05D008950 2.8e-15 85.5 41 87.8
ATR1127G111 Amborella trichopoda HOM05D007102 ORTHO05D008950 3.7e-15 85.1 42 88.1
Phvul.006G081700 Phaseolus vulgaris HOM05D007102 ORTHO05D008950 3.7e-15 85.1 41 87.8
Ah.05g170720 Amaranthus hybridus HOM05D007102 ORTHO05D008950 4.8e-15 84.7 42 83.3
MD03G1047200 Malus domestica HOM05D007102 ORTHO05D008950 4.8e-15 84.7 41 92.7
MD11G1049700 Malus domestica HOM05D007102 ORTHO05D008950 4.8e-15 84.7 41 92.7
Oeu005352.1 Olea europaea HOM05D007102 ORTHO05D008950 4.8e-15 84.7 42 88.1
PSO266G0014 Papaver somniferum HOM05D007102 ORTHO05D008950 4.8e-15 84.7 42 88.1
PSO384G1696 Papaver somniferum HOM05D007102 ORTHO05D008950 4.8e-15 84.7 42 88.1
Prupe.6G038400 Prunus persica HOM05D007102 ORTHO05D008950 4.8e-15 84.7 41 92.7
TAR624G0943 Trochodendron aralioides HOM05D007102 ORTHO05D008950 4.8e-15 84.7 42 85.7
EL10Ac1g01074 Beta vulgaris HOM05D007102 ORTHO05D008950 6.3e-15 84.3 41 87.8
AUR62027864 Chenopodium quinoa HOM05D007102 ORTHO05D008950 6.3e-15 84.3 41 87.8
Cc01_g08950 Coffea canephora HOM05D007102 ORTHO05D008950 6.3e-15 84.3 41 90.2
Rhsim01G0245100 Rhododendron simsii HOM05D007102 ORTHO05D008950 6.3e-15 84.3 42 88.1
vmacro14656 Vaccinium macrocarpon HOM05D007102 ORTHO05D008950 6.3e-15 84.3 42 88.1
VMungo0540G2371 Vigna mungo HOM05D007102 ORTHO05D008950 6.3e-15 84.3 42 83.3
AUR62019027 Chenopodium quinoa HOM05D007102 ORTHO05D008950 1.1e-14 83.6 41 87.8
Hma1.2p1_0170F.1_g075390 Hydrangea macrophylla HOM05D007102 ORTHO05D008950 1.8e-14 82.8 40 87.5
unitig_0.g217 Utricularia gibba HOM05D007102 ORTHO05D008950 1.8e-14 82.8 41 90.2
Gorai.013G019100 Gossypium raimondii HOM05D007102 ORTHO05D008950 2.4e-14 82.4 41 85.4
Lj6g0026798 Lotus japonicus HOM05D007102 ORTHO05D008950 3.1e-14 82.0 41 90.2
Actinidia23827 Actinidia chinensis HOM05D007102 ORTHO05D008950 7.0e-14 80.9 41 85.4
Haze_24494 Corylus avellana HOM05D007102 ORTHO05D008950 9.1e-14 80.5 116 40.5
Lj2C1106T0 Lonicera japonica HOM05D007102 ORTHO05D008950 9.1e-14 80.5 42 85.7
Zm00001eb145680 Zea mays HOM05D007102 ORTHO05D008950 2.0e-13 79.3 40 87.5
Actinidia34510 Actinidia chinensis HOM05D007102 ORTHO05D008950 2.7e-13 79.0 41 82.9
Os01g0882500 Oryza sativa ssp. japonica HOM05D007102 ORTHO05D008950 5.9e-13 77.8 40 82.5
Pp3c3_15360 Physcomitrium patens HOM05D007102 ORTHO05D008950 7.7e-13 77.4 42 78.6
COL.COLO4_11231 Corchorus olitorius HOM05D007102 ORTHO05D008950 2.2e-12 75.9 35 94.3
Mapoly0073s0080 Marchantia polymorpha HOM05D007102 ORTHO05D008950 5.0e-12 74.7 41 80.5
SEGI_29953 Sequoiadendron giganteum HOM05D007102 ORTHO05D008950 8.5e-12 73.9 50 64.0
Pp3c10_12660 Physcomitrium patens HOM05D007102 ORTHO05D008950 7.2e-11 70.9 41 73.2
SMO119G0373 Selaginella moellendorffii HOM05D007102 ORTHO05D008950 2.1e-10 69.3 41 68.3
Hund16865 Selenicereus undatus HOM05D007102 ORTHO05D008950 8.8e-09 63.9 34 82.4


User provided reference genes

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