Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 0.0e+00 1429.8 726 100.0
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 0.0e+00 1311.2 727 90.8
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 0.0e+00 1250.3 725 86.9
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 0.0e+00 1248.4 835 78.4
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1174.8 726 82.4
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 0.0e+00 1167.9 726 80.4
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1166.4 726 80.2
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1165.6 726 80.3
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 0.0e+00 1159.4 726 80.6
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 0.0e+00 1157.9 721 80.4
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 0.0e+00 1156.0 726 80.2
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 0.0e+00 1148.7 725 79.2
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 0.0e+00 1140.2 727 78.3
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 0.0e+00 1136.7 726 79.9
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 0.0e+00 1133.2 726 79.5
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 0.0e+00 1132.5 726 78.9
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 0.0e+00 1129.8 729 78.5
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 0.0e+00 1129.0 727 79.4
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 0.0e+00 1128.6 728 79.3
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 0.0e+00 1127.9 729 77.9
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 0.0e+00 1125.9 729 77.8
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 0.0e+00 1122.1 729 77.5
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 0.0e+00 1121.7 729 77.4
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 0.0e+00 1120.1 730 77.0
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 0.0e+00 1115.9 726 77.8
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 0.0e+00 1112.1 722 76.5
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 0.0e+00 1111.7 726 77.1
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 0.0e+00 1104.0 726 77.3
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 0.0e+00 1099.7 730 75.6
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 0.0e+00 1097.8 726 77.8
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 0.0e+00 1097.8 726 77.3
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 0.0e+00 1093.2 729 76.5
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 0.0e+00 1086.6 739 75.8
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 0.0e+00 1080.9 719 75.0
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 0.0e+00 1080.5 729 75.7
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 5.0e-312 1074.7 732 76.0
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 3.5e-311 1071.2 795 71.3
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 7.4e-311 1070.1 726 74.4
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 2.3e-307 1058.5 730 75.3
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 4.8e-305 1050.8 727 74.0
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 1.2e-303 1046.2 727 72.8
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 3.8e-302 1041.2 726 72.9
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 2.4e-301 1038.5 722 73.7
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 3.9e-299 1031.2 726 72.5
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 8.7e-299 1030.0 724 72.4
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 8.7e-299 1030.0 724 72.5
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 9.6e-298 1026.5 726 70.5
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 8.1e-297 1023.5 729 73.1
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 1.1e-296 1023.1 624 82.4
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 1.4e-296 1022.7 731 73.7
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 1.8e-296 1022.3 724 71.4
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 6.9e-296 1020.4 726 72.7
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 1.3e-294 1016.1 724 70.6
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 1.6e-292 1009.2 724 70.2
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 3.5e-292 1008.1 724 70.0
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 7.9e-292 1006.9 723 72.3
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 2.3e-291 1005.4 726 70.1
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 2.3e-291 1005.4 727 72.2
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 1.9e-290 1002.3 726 71.1
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 3.7e-289 998.0 734 70.7
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 9.0e-288 993.4 700 71.4
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 4.9e-286 987.6 727 68.1
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 4.3e-282 974.5 733 68.2
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 2.4e-280 968.8 727 68.5
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 3.0e-275 951.8 653 74.1
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 2.6e-271 938.7 726 65.7
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 3.8e-270 934.9 726 65.3
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 1.4e-269 932.9 727 65.6
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 4.2e-269 931.4 725 65.2
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 7.2e-269 930.6 729 65.0
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 1.0e-267 926.8 726 64.7
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 3.0e-267 925.2 726 64.6
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 6.7e-267 924.1 724 64.2
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 2.0e-266 922.5 727 64.1
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 2.0e-266 922.5 727 64.1
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 2.0e-266 922.5 727 64.1
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 5.7e-266 921.0 726 64.9
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.2e-246 855.9 727 61.1
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.9e-246 855.5 727 60.9
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 8.0e-244 847.4 727 61.5
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 2.7e-223 779.2 587 69.3
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 7.3e-221 771.2 664 60.1
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.0e-218 763.1 482 78.2
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 6.6e-206 721.5 733 54.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 9.6e-197 691.0 671 56.8
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 2.4e-192 676.4 469 74.2
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 2.5e-189 666.4 437 79.6
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.5e-189 666.4 598 59.5
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 3.6e-188 662.5 669 53.5
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 3.1e-187 659.4 682 52.2
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 5.3e-179 632.1 682 49.7
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 6.9e-179 631.7 674 49.9
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 8.5e-161 571.6 432 64.8
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 3.3e-157 559.7 509 58.7
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 2.4e-155 553.5 431 67.3
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.7e-151 540.0 379 72.6
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 3.8e-145 519.6 670 44.3
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.1e-139 501.5 393 63.4
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 3.3e-133 479.9 479 56.2
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 4.4e-125 453.0 392 61.0
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 1.1e-123 448.4 662 38.1
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 9.1e-123 445.3 325 73.2
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 1.0e-121 441.8 310 69.0
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 4.0e-118 429.9 312 73.1
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 2.0e-117 427.6 335 66.3
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 2.6e-109 400.6 296 69.6
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.0e-105 388.7 586 42.0
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 9.2e-99 365.5 268 71.3
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 8.6e-97 359.0 228 80.7
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 2.1e-90 337.8 237 70.5
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 5.1e-81 306.6 206 71.8
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 5.6e-64 250.0 152 78.3
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.4e-62 244.6 155 81.3
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 2.4e-62 244.6 160 81.2
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 7.6e-45 186.4 140 65.0
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 2.2e-31 141.7 741 25.5
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 3.6e-26 124.4 104 60.6
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.7e-23 115.5 71 80.3
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 2.7e-18 98.2 69 68.1
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.7e-15 89.0 66 74.2
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 1.5e-11 75.9 681 22.0
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 1.2e-10 72.8 52 61.5
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 1.8e-09 68.9 45 73.3


User provided reference genes

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