Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.9e-106 387.1 194 100.0
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 3.6e-66 255.4 192 66.7
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 5.2e-65 251.5 192 67.7
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 5.7e-64 248.1 192 67.2
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.8e-63 245.0 192 66.1
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 8.3e-63 244.2 191 66.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 5.4e-62 241.5 189 66.7
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.2e-61 240.4 192 66.1
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.7e-61 239.2 185 68.1
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 2.7e-61 239.2 192 66.1
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 3.5e-61 238.8 194 66.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 3.5e-61 238.8 194 66.5
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 3.5e-61 238.8 192 66.1
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.5e-61 238.4 192 65.1
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.9e-60 235.7 192 66.1
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 5.0e-60 235.0 193 64.2
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 8.5e-60 234.2 193 64.2
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 8.5e-60 234.2 192 66.7
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 8.5e-60 234.2 194 63.9
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.1e-59 233.8 192 66.7
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 4.2e-59 231.9 194 63.4
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 5.5e-59 231.5 193 61.1
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 5.5e-59 231.5 194 63.4
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 1.2e-58 230.3 192 65.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 6.1e-58 228.0 194 61.9
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 8.0e-58 227.6 192 64.1
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.0e-57 227.3 192 62.5
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 6.8e-57 224.6 188 62.8
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 6.8e-57 224.6 192 61.5
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 6.8e-57 224.6 187 63.6
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.0e-56 223.0 189 64.6
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 4.4e-56 221.9 189 64.0
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 5.7e-56 221.5 192 63.0
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 7.5e-56 221.1 200 58.0
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 7.5e-56 221.1 192 62.0
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 9.8e-56 220.7 205 58.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 9.8e-56 220.7 192 62.5
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.3e-55 220.3 193 60.6
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.7e-55 219.9 191 61.3
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.7e-55 219.9 192 59.9
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.2e-55 219.5 192 60.4
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.8e-55 219.2 218 56.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 3.7e-55 218.8 192 62.0
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 8.3e-55 217.6 192 62.0
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.1e-54 217.2 188 62.2
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.4e-54 216.9 193 61.1
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 2.4e-54 216.1 191 60.2
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 3.1e-54 215.7 191 60.7
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 3.1e-54 215.7 192 59.9
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.1e-54 215.3 193 59.6
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 5.4e-54 214.9 188 61.2
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 7.0e-54 214.5 188 61.2
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 9.2e-54 214.2 192 61.5
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.2e-53 213.8 191 59.7
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.2e-53 213.8 191 59.7
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.2e-53 213.8 191 59.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 2.7e-53 212.6 191 59.2
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 3.5e-53 212.2 193 58.0
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.7e-53 211.1 188 59.6
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.3e-52 210.3 192 59.4
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.7e-52 209.9 192 60.4
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.3e-52 209.5 193 58.0
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.5e-51 206.8 192 58.3
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 9.5e-51 204.1 192 56.2
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.6e-50 203.4 193 55.4
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 3.6e-50 202.2 127 78.7
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 4.7e-50 201.8 111 87.4
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.1e-50 201.4 188 58.0
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.2e-49 198.4 192 58.3
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.0e-48 196.4 192 57.3
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 3.4e-48 195.7 193 54.9
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 3.4e-48 195.7 191 57.1
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 4.4e-48 195.3 192 56.2
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 5.7e-48 194.9 111 83.8
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.2e-47 193.0 113 83.2
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.9e-47 192.6 111 83.8
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.7e-47 192.2 112 83.0
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 6.4e-47 191.4 112 84.8
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 8.3e-47 191.0 132 75.8
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.8e-46 189.9 119 77.3
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.8e-46 189.9 113 79.6
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 2.4e-46 189.5 112 82.1
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 2.4e-46 189.5 193 52.3
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.4e-46 189.5 193 53.4
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.2e-46 189.1 109 83.5
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 5.4e-46 188.3 109 86.2
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 7.0e-46 188.0 187 53.5
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 9.2e-46 187.6 192 53.6
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 9.2e-46 187.6 192 56.2
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.2e-45 187.2 193 54.4
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.6e-45 186.8 193 55.4
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 3.5e-45 185.7 188 52.1
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.9e-45 184.9 193 52.8
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.0e-44 184.1 191 51.8
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.0e-44 184.1 193 52.8
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.7e-44 183.3 111 79.3
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.3e-44 183.0 194 52.6
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.9e-44 182.2 192 52.1
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 5.0e-44 181.8 122 72.1
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 5.0e-44 181.8 188 53.2
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 6.6e-44 181.4 138 69.6
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 8.6e-44 181.0 193 52.8
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 3.3e-43 179.1 111 77.5
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 4.3e-43 178.7 112 77.7
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 7.3e-43 177.9 189 52.4
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 8.0e-42 174.5 194 54.1
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.1e-41 172.6 187 49.7
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 8.9e-41 171.0 157 59.9
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.5e-40 170.2 110 74.5
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 9.8e-40 167.5 131 62.6
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 9.8e-40 167.5 142 60.6
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.3e-39 167.2 192 49.0
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 2.9e-39 166.0 189 49.2
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 3.7e-39 165.6 193 47.7
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 6.0e-37 158.3 188 47.9
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.3e-36 157.1 117 65.0
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 5.0e-36 155.2 192 50.0
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 7.3e-35 151.4 201 46.3
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 9.5e-35 151.0 192 49.5
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 9.5e-35 151.0 192 45.3
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 2.3e-33 146.4 188 44.1
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.3e-33 146.4 95 72.6
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.2e-32 144.1 76 86.8
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 2.0e-32 143.3 192 42.7
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.4e-32 142.1 118 64.4
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.4e-32 142.1 112 66.1
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.7e-31 139.0 111 61.3
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 8.3e-31 137.9 156 48.1
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 5.4e-30 135.2 193 45.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.1e-29 133.3 185 42.2
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 9.5e-27 124.4 70 84.3
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 9.5e-27 124.4 193 43.0
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.8e-25 120.2 111 62.2
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 2.3e-25 119.8 69 85.5
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 8.9e-25 117.9 131 52.7
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 8.4e-23 111.3 94 63.8
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.2e-22 109.4 67 77.6
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 2.7e-21 106.3 120 54.2
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.5e-21 105.9 191 38.7
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.5e-21 105.9 70 72.9
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.6e-21 105.5 121 53.7
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.3e-19 99.4 68 64.7
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 2.4e-17 93.2 69 69.6
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 8.9e-17 91.3 62 72.6
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.3e-15 87.4 122 44.3
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 6.0e-13 78.6 50 76.0
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 5.6e-11 72.0 187 31.6
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 9.6e-11 71.2 47 63.8
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 3.6e-10 69.3 45 75.6
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 3.4e-08 62.8 40 70.0
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.5e-08 62.4 55 50.9
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 1.7e-07 60.5 36 75.0
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.7e-07 60.5 40 65.0
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 3.8e-07 59.3 110 34.5
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 4.9e-07 58.9 36 72.2
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 6.4e-07 58.5 40 65.0
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 6.4e-07 58.5 45 55.6
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.9e-06 57.0 44 59.1
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 1.9e-06 57.0 42 64.3
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 2.4e-06 56.6 36 69.4
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 7.1e-06 55.1 44 54.5
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 9.3e-06 54.7 40 60.0


User provided reference genes

Program Settings