Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 4.8e-91 337.8 169 100.0
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 2.4e-50 202.6 175 63.4
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 1.0e-48 197.2 176 63.1
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 4.2e-47 191.8 175 60.6
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 4.2e-47 191.8 175 60.6
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.6e-46 189.9 176 60.8
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.6e-46 189.9 171 60.8
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.1e-46 189.5 176 60.2
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 3.6e-46 188.7 167 61.1
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 6.1e-46 188.0 172 58.7
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 1.0e-45 187.2 176 58.0
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.0e-45 187.2 176 58.0
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 1.4e-45 186.8 178 58.4
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 1.4e-45 186.8 174 59.2
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.8e-45 186.4 172 61.6
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 1.8e-45 186.4 172 61.6
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.3e-45 186.0 176 58.0
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.2e-44 183.7 172 61.0
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 1.5e-44 183.3 174 60.9
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 2.6e-44 182.6 176 59.7
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 9.8e-44 180.6 165 60.6
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 2.8e-43 179.1 172 60.5
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 3.7e-43 178.7 183 57.9
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 6.3e-43 177.9 175 59.4
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 9.1e-42 174.1 174 58.6
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 4.5e-41 171.8 173 56.6
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.0e-40 170.6 169 56.8
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 1.3e-40 170.2 171 58.5
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 1.7e-40 169.9 172 59.3
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 2.9e-40 169.1 171 57.9
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 1.5e-39 166.8 164 56.7
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.9e-39 166.4 170 54.7
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 1.2e-38 163.7 171 56.1
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 2.8e-38 162.5 174 55.2
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 2.0e-36 156.4 185 51.9
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 2.0e-36 156.4 177 52.5
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 1.3e-35 153.7 168 56.0
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 1.7e-35 153.3 174 55.2
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 2.2e-35 152.9 181 55.2
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 2.2e-35 152.9 129 66.7
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.9e-35 151.8 169 52.7
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.9e-35 151.8 169 53.3
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.1e-34 150.6 169 52.7
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 1.4e-34 150.2 166 56.6
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 3.1e-34 149.1 165 55.2
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 5.4e-34 148.3 169 53.8
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 5.4e-34 148.3 171 53.8
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 9.2e-34 147.5 178 51.1
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 2.0e-33 146.4 166 51.8
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 3.5e-33 145.6 164 53.7
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 7.8e-33 144.4 166 54.8
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 2.9e-32 142.5 176 49.4
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 5.0e-32 141.7 224 44.6
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 5.0e-32 141.7 165 49.7
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 1.1e-31 140.6 114 62.3
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 3.3e-31 139.0 174 53.4
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 4.3e-31 138.7 166 50.0
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 7.3e-31 137.9 168 51.2
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 7.3e-31 137.9 149 54.4
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 9.5e-31 137.5 176 47.7
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 4.7e-30 135.2 137 53.3
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 2.3e-29 132.9 142 53.5
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 4.0e-29 132.1 172 50.0
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 5.2e-29 131.7 147 54.4
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 5.2e-29 131.7 139 54.0
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.0e-28 129.8 172 49.4
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 4.4e-28 128.6 155 47.7
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 5.8e-28 128.3 137 54.7
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 5.8e-28 128.3 140 53.6
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 9.8e-28 127.5 171 48.5
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 1.7e-27 126.7 151 51.0
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 1.7e-27 126.7 172 47.1
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 1.7e-27 126.7 223 41.7
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 3.7e-27 125.6 172 47.7
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 6.4e-27 124.8 183 45.9
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.1e-26 124.0 173 48.0
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 1.4e-26 123.6 156 50.6
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 1.4e-26 123.6 201 42.8
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.4e-26 123.6 145 49.0
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 1.4e-26 123.6 166 48.2
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 1.4e-26 123.6 172 47.1
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 1.9e-26 123.2 166 48.8
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 2.7e-25 119.4 151 47.7
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 2.7e-25 119.4 171 46.8
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 7.8e-25 117.9 100 62.0
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.0e-24 117.5 172 44.2
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 5.0e-24 115.2 135 47.4
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 2.5e-23 112.8 151 48.3
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 2.5e-23 112.8 213 39.0
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.8e-21 106.7 146 43.8
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 3.1e-21 105.9 149 45.0
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 5.2e-21 105.1 156 47.4
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 8.9e-21 104.4 143 42.7
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 3.7e-19 99.0 103 50.5
Hma1.2p1_1756F.1_g301045 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 4.9e-19 98.6 104 53.8
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.9e-18 96.7 122 45.1
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 1.3e-16 90.5 172 37.8
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.3e-16 90.5 149 40.3
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 1.7e-16 90.1 149 38.9
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 5.1e-16 88.6 139 41.0
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.5e-15 87.0 139 39.6
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 5.6e-15 85.1 149 37.6
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 1.2e-14 84.0 129 44.2
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 1.6e-14 83.6 80 57.5
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 8.1e-14 81.3 92 43.5
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 1.4e-13 80.5 84 47.6
CiPaw.10G142500 Carya illinoinensis HOM05D005992 ORTHO05D007476 5.2e-13 78.6 65 67.7
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 8.9e-13 77.8 149 35.6
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 8.9e-13 77.8 149 35.6
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 3.4e-12 75.9 161 34.8
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 1.9e-10 70.1 94 41.5
CiPaw.16G094700 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.9e-10 70.1 87 52.9
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 7.1e-10 68.2 78 47.4
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 1.6e-09 67.0 86 47.7
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 4.6e-09 65.5 97 45.4
Aqoxy4G02934 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.3e-08 63.9 123 33.3
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 1.7e-08 63.5 110 37.3
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.6e-06 57.0 123 30.9
Gorai.009G395900 Gossypium raimondii HOM05D005992 ORTHO05D007476 2.8e-06 56.2 57 57.9
Gohir.D11G007175 Gossypium hirsutum HOM05D005992 ORTHO05D007476 3.6e-06 55.8 57 56.1


User provided reference genes

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