Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G051200 Carya illinoinensis HOM05D000330 ORTHO05D034135 3.0e-57 224.9 111 100.0
CiPaw.04G020700 Carya illinoinensis HOM05D000330 ORTHO05D000209 4.6e-34 147.9 99 78.8
CiPaw.03G031100 Carya illinoinensis HOM05D000330 ORTHO05D000209 9.3e-27 123.6 100 68.0
Cfa007500 Carpinus fangiana HOM05D000330 ORTHO05D000209 1.6e-26 122.9 100 65.0
Haze_14595 Corylus avellana HOM05D000330 ORTHO05D000209 1.3e-25 119.8 100 64.0
Dinv33695 Davidia involucrata HOM05D000330 ORTHO05D000209 8.7e-25 117.1 101 59.4
Cc07_g02860 Coffea canephora HOM05D000330 ORTHO05D000209 9.6e-24 113.6 102 57.8
CSS0040344 Camellia sinensis var. sinensis HOM05D000330 ORTHO05D000209 1.6e-23 112.8 77 70.1
TWI56G0145 Tripterygium wilfordii HOM05D000330 ORTHO05D000209 1.4e-22 109.8 98 61.2
CSS0033731 Camellia sinensis var. sinensis HOM05D000330 ORTHO05D000209 2.4e-22 109.0 77 68.8
Lsat_1_v5_gn_3_102000 Lactuca sativa HOM05D000330 ORTHO05D000209 5.3e-22 107.8 79 64.6
Hma1.2p1_0449F.1_g154910 Hydrangea macrophylla HOM05D000330 ORTHO05D000209 1.2e-21 106.7 102 55.9
Oeu033346.1 Olea europaea HOM05D000330 ORTHO05D000209 1.5e-21 106.3 102 55.9
Eucgr.J02142 Eucalyptus grandis HOM05D000330 ORTHO05D000209 2.0e-21 105.9 94 58.5
Hma1.2p1_0017F.1_g012110 Hydrangea macrophylla HOM05D000330 ORTHO05D000209 3.4e-21 105.1 77 64.9
CANSAT64G2828 Cannabis sativa HOM05D000330 ORTHO05D000209 7.6e-21 104.0 100 57.0
CAN.G206.100 Capsicum annuum HOM05D000330 ORTHO05D000209 7.6e-21 104.0 80 65.0
Glyma.13G065900 Glycine max HOM05D000330 ORTHO05D000209 7.6e-21 104.0 99 56.6
MD17G1046000 Malus domestica HOM05D000330 ORTHO05D000209 2.2e-20 102.4 100 55.0
TWI12G0676 Tripterygium wilfordii HOM05D000330 ORTHO05D000209 2.2e-20 102.4 95 57.9
Dinv34995 Davidia involucrata HOM05D000330 ORTHO05D000209 2.9e-20 102.1 76 71.1
MELO3C009898.2 Cucumis melo HOM05D000330 ORTHO05D000209 4.9e-20 101.3 94 52.1
CsaV3_3G041780 Cucumis sativus L. HOM05D000330 ORTHO05D000209 4.9e-20 101.3 94 52.1
Prupe.3G273700 Prunus persica HOM05D000330 ORTHO05D000209 4.9e-20 101.3 100 55.0
ClCG10G014760 Citrullus lanatus HOM05D000330 ORTHO05D000209 6.5e-20 100.9 94 52.1
Actinidia38744 Actinidia chinensis HOM05D000330 ORTHO05D000209 8.4e-20 100.5 100 55.0
MD09G1044100 Malus domestica HOM05D000330 ORTHO05D000209 8.4e-20 100.5 94 56.4
SGA_v2.0_scaffold30G12514 Striga asiatica HOM05D000330 ORTHO05D000209 8.4e-20 100.5 103 52.4
Potri.017G075600 Populus trichocarpa HOM05D000330 ORTHO05D000209 1.1e-19 100.1 94 55.3
RcHm_v2.0_Chr2g0169441 Rosa chinensis HOM05D000330 ORTHO05D000209 1.1e-19 100.1 104 54.8
Cfa000837 Carpinus fangiana HOM05D000330 ORTHO05D034135 1.9e-19 99.4 78 64.1
Cfa000838 Carpinus fangiana HOM05D000330 ORTHO05D034135 1.9e-19 99.4 78 64.1
Migut.H00883 Erythranthe guttata HOM05D000330 ORTHO05D000209 2.5e-19 99.0 84 57.1
Peaxi162Scf00129g00633 Petunia axillaris HOM05D000330 ORTHO05D000209 2.5e-19 99.0 103 51.5
FAN02G0424 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.2e-19 98.2 103 54.4
FAN02G0450 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.2e-19 98.2 103 54.4
FAN02G1069 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.2e-19 98.2 103 54.4
FAN05G1953 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.2e-19 98.2 103 54.4
FAN09G4868 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.2e-19 98.2 103 54.4
Manes.15G176300 Manihot esculenta HOM05D000330 ORTHO05D000209 4.2e-19 98.2 100 56.0
SalBow1G1277 Salvia bowleyana HOM05D000330 ORTHO05D000209 4.2e-19 98.2 82 57.3
Atru.chr8.2442 Acer truncatum HOM05D000330 ORTHO05D000209 5.5e-19 97.8 102 55.9
Cpa.g.sc14.55 Carica papaya HOM05D000330 ORTHO05D000209 7.1e-19 97.4 102 52.9
Sabra17G0067500 Salix brachista HOM05D000330 ORTHO05D000209 7.1e-19 97.4 100 53.0
FvH4_6g49530 Fragaria vesca HOM05D000330 ORTHO05D000209 1.6e-18 96.3 103 53.4
FAN14G0780 Fragaria x ananassa HOM05D000330 ORTHO05D000209 1.6e-18 96.3 103 53.4
FAN14G4196 Fragaria x ananassa HOM05D000330 ORTHO05D000209 1.6e-18 96.3 103 53.4
arahy.Tifrunner.gnm1.ann1.LS0J2N Arachis hypogaea HOM05D000330 ORTHO05D000209 4.6e-18 94.7 102 52.0
arahy.Tifrunner.gnm1.ann1.TPH81X Arachis hypogaea HOM05D000330 ORTHO05D000209 4.6e-18 94.7 102 52.0
Lj2g0027029 Lotus japonicus HOM05D000330 ORTHO05D000209 4.6e-18 94.7 85 58.8
Potri.004G130300 Populus trichocarpa HOM05D000330 ORTHO05D000209 4.6e-18 94.7 78 59.0
PGR142G1488 Punica granatum HOM05D000330 ORTHO05D000209 4.6e-18 94.7 94 54.3
Actinidia36038 Actinidia chinensis HOM05D000330 ORTHO05D000209 6.0e-18 94.4 92 55.4
Rhsim10G0030800 Rhododendron simsii HOM05D000330 ORTHO05D000209 6.0e-18 94.4 100 53.0
MSTRG.3213 Avicennia marina HOM05D000330 ORTHO05D000209 1.0e-17 93.6 83 57.8
Sed0020271 Sechium edule HOM05D000330 ORTHO05D000209 1.8e-17 92.8 94 47.9
QL02p079896 Quercus lobata HOM05D000330 ORTHO05D000209 2.3e-17 92.4 84 59.5
Sabra04G0087400 Salix brachista HOM05D000330 ORTHO05D000209 2.3e-17 92.4 78 57.7
Actinidia06058 Actinidia chinensis HOM05D000330 ORTHO05D000209 3.0e-17 92.0 92 53.3
Nn3g17089 Nelumbo nucifera HOM05D000330 ORTHO05D000209 3.9e-17 91.7 100 52.0
Phvul.004G025100 Phaseolus vulgaris HOM05D000330 ORTHO05D000209 5.1e-17 91.3 100 51.0
Lj7A402G43 Lonicera japonica HOM05D000330 ORTHO05D000209 6.7e-17 90.9 85 57.6
Ca_04257_v3 Cicer arietinum L. HOM05D000330 ORTHO05D000209 1.1e-16 90.1 101 56.4
Lalb_Chr02g0159441 Lupinus albus HOM05D000330 ORTHO05D000209 1.1e-16 90.1 82 58.5
Medtr6g011080 Medicago truncatula HOM05D000330 ORTHO05D000209 3.3e-16 88.6 103 52.4
Sed0027031 Sechium edule HOM05D000330 ORTHO05D000209 4.3e-16 88.2 77 55.8
Thecc.04G072900 Theobroma cacao HOM05D000330 ORTHO05D000209 5.7e-16 87.8 82 59.8
Actinidia02719 Actinidia chinensis HOM05D000330 ORTHO05D000209 1.3e-15 86.7 100 50.0
Nitab4.5_0001239g0180 Nicotiana tabacum HOM05D000330 ORTHO05D000209 2.2e-15 85.9 103 47.6
Nitab4.5_0002265g0180 Nicotiana tabacum HOM05D000330 ORTHO05D000209 2.2e-15 85.9 103 47.6
Psat0s1303g0040 Pisum sativum HOM05D000330 ORTHO05D000209 2.2e-15 85.9 102 52.0
SGA_v2.0_scaffold135G34787 Striga asiatica HOM05D000330 ORTHO05D000209 2.2e-15 85.9 108 47.2
Migut.K01345 Erythranthe guttata HOM05D000330 ORTHO05D000209 2.8e-15 85.5 106 47.2
Duzib187G0239 Durio zibethinus HOM05D000330 ORTHO05D000209 3.7e-15 85.1 82 58.5
Gohir.A09G022801 Gossypium hirsutum HOM05D000330 ORTHO05D000209 3.7e-15 85.1 82 59.8
Gohir.D09G022000 Gossypium hirsutum HOM05D000330 ORTHO05D000209 3.7e-15 85.1 82 59.8
Gorai.006G025900 Gossypium raimondii HOM05D000330 ORTHO05D000209 3.7e-15 85.1 82 59.8
THA.LOC104821053 Tarenaya hassleriana HOM05D000330 ORTHO05D000209 6.3e-15 84.3 104 46.2
Hund13282 Selenicereus undatus HOM05D000330 ORTHO05D000209 8.2e-15 84.0 103 49.5
DCAR_006718 Daucus carota HOM05D000373 ORTHO05D001146 1.4e-14 83.2 94 50.0
TAR374G0099 Trochodendron aralioides HOM05D000330 ORTHO05D000209 1.8e-14 82.8 100 49.0
Nitab4.5_0000002g0520 Nicotiana tabacum HOM05D000330 ORTHO05D000209 2.4e-14 82.4 77 53.2
VMungo0464G1274 Vigna mungo HOM05D000330 ORTHO05D000209 3.1e-14 82.0 87 51.7
Nitab4.5_0003708g0040 Nicotiana tabacum HOM05D000330 ORTHO05D000209 4.1e-14 81.6 77 53.2
Sc10g0003920 Simmondsia chinensis HOM05D000330 ORTHO05D000209 5.3e-14 81.3 88 53.4
PGSC0003DMG400017854 Solanum tuberosum HOM05D000330 ORTHO05D000209 6.9e-14 80.9 94 52.1
PGSC0003DMG400001408 Solanum tuberosum HOM05D000330 ORTHO05D000209 1.2e-13 80.1 102 47.1
Aqoxy3G03225 Aquilegia oxysepala HOM05D000330 ORTHO05D000209 1.5e-13 79.7 107 48.6
Solyc02g087550.3 Solanum lycopersicum HOM05D000330 ORTHO05D000209 4.5e-13 78.2 102 46.1
Lsat_1_v5_gn_4_180161 Lactuca sativa HOM05D000330 ORTHO05D000209 5.9e-13 77.8 76 52.6
Sopen02g032320 Solanum pennellii HOM05D000330 ORTHO05D000209 5.9e-13 77.8 102 46.1
CAN.G1146.2 Capsicum annuum HOM05D000330 ORTHO05D000209 1.0e-12 77.0 84 50.0
Duzib147G0815 Durio zibethinus HOM05D000330 ORTHO05D000209 1.0e-12 77.0 82 54.9
Gohir.A11G069000 Gossypium hirsutum HOM05D000330 ORTHO05D000209 1.7e-12 76.3 82 52.4
Gohir.D11G073000 Gossypium hirsutum HOM05D000330 ORTHO05D000209 1.7e-12 76.3 82 52.4
Gorai.007G078400 Gossypium raimondii HOM05D000330 ORTHO05D000209 1.7e-12 76.3 82 52.4
vmacro05760 Vaccinium macrocarpon HOM05D000330 ORTHO05D000209 5.0e-12 74.7 101 45.5
Thhalv10013590m.g Eutrema salsugineum HOM05D000330 ORTHO05D000209 6.5e-12 74.3 101 43.6
THA.LOC104808014 Tarenaya hassleriana HOM05D000330 ORTHO05D000209 6.5e-12 74.3 98 49.0
DCAR_011170 Daucus carota HOM05D000330 ORTHO05D000209 8.5e-12 73.9 97 44.3
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 1.9e-11 72.8 82 50.0
HanXRQChr09g0265621 Helianthus annuus HOM05D000330 ORTHO05D000209 1.9e-11 72.8 75 52.0
Hund15668 Selenicereus undatus HOM05D000330 ORTHO05D000209 1.9e-11 72.8 86 47.7
AL6G25870 Arabidopsis lyrata HOM05D000330 ORTHO05D000209 2.5e-11 72.4 101 42.6
HanXRQChr05g0153201 Helianthus annuus HOM05D000330 ORTHO05D000209 3.2e-11 72.0 73 49.3
HanXRQChr11g0346891 Helianthus annuus HOM05D000330 ORTHO05D000209 3.2e-11 72.0 73 49.3
AT5G15050 Arabidopsis thaliana HOM05D000330 ORTHO05D000209 4.2e-11 71.6 101 42.6
CARHR198260 Cardamine hirsuta HOM05D000330 ORTHO05D000209 4.2e-11 71.6 101 42.6
Aa31LG11G14490 Aethionema arabicum HOM05D000330 ORTHO05D000209 7.2e-11 70.9 101 44.6
Sp6g29010 Schrenkiella parvula HOM05D000330 ORTHO05D000209 7.2e-11 70.9 101 41.6
Sopen03g020270 Solanum pennellii HOM05D000330 ORTHO05D000209 9.4e-11 70.5 85 49.4
EL10Ac2g02921 Beta vulgaris HOM05D000330 ORTHO05D000209 1.2e-10 70.1 109 45.0
Thhalv10027776m.g Eutrema salsugineum HOM05D000330 ORTHO05D000209 1.6e-10 69.7 84 47.6
AUR62018306 Chenopodium quinoa HOM05D000330 ORTHO05D000209 3.6e-10 68.6 110 42.7
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 3.6e-10 68.6 64 57.8
CARHR262140 Cardamine hirsuta HOM05D000330 ORTHO05D000209 4.6e-10 68.2 89 48.3
AUR62030575 Chenopodium quinoa HOM05D000330 ORTHO05D000209 4.6e-10 68.2 110 40.9
Carub.0006s1322 Capsella rubella HOM05D000330 ORTHO05D000209 6.1e-10 67.8 102 41.2
A07p20180 Brassica napus HOM05D000330 ORTHO05D000209 7.9e-10 67.4 84 46.4
TAR640G0006 Trochodendron aralioides HOM05D000330 ORTHO05D000209 7.9e-10 67.4 84 47.6
Ah.12g065320 Amaranthus hybridus HOM05D000330 ORTHO05D000209 1.0e-09 67.0 95 42.1
Solyc03g077910.4 Solanum lycopersicum HOM05D000330 ORTHO05D000209 1.0e-09 67.0 85 48.2
TAR622G0725 Trochodendron aralioides HOM05D000330 ORTHO05D000209 1.4e-09 66.6 86 46.5
CDE07G1182 Ceratophyllum demersum HOM05D000330 ORTHO05D000209 2.3e-09 65.9 96 45.8
AL7G50100 Arabidopsis lyrata HOM05D000330 ORTHO05D000209 3.0e-09 65.5 94 45.7
BraA07t29717Z Brassica rapa HOM05D000330 ORTHO05D000209 3.9e-09 65.1 84 45.2
BraA02t05258Z Brassica rapa HOM05D000330 ORTHO05D000209 6.7e-09 64.3 102 42.2
HanXRQChr17g0547541 Helianthus annuus HOM05D000330 ORTHO05D000209 6.7e-09 64.3 79 48.1
A02p02850 Brassica napus HOM05D000330 ORTHO05D000209 1.5e-08 63.2 102 41.2
C02p07470 Brassica napus HOM05D000330 ORTHO05D000209 1.9e-08 62.8 103 42.7
BolC2t06678H Brassica oleracea HOM05D000330 ORTHO05D000209 1.9e-08 62.8 103 42.7
PSO591G0250 Papaver somniferum HOM05D000330 ORTHO05D000209 3.3e-08 62.0 103 41.7
Sp7g02080 Schrenkiella parvula HOM05D000330 ORTHO05D000209 4.3e-08 61.6 88 42.0
PSO832G0478 Papaver somniferum HOM05D000330 ORTHO05D000209 7.4e-08 60.8 103 40.8
Carub.0007s3570 Capsella rubella HOM05D000330 ORTHO05D000209 2.2e-07 59.3 96 42.7
MBI04_g18043_MAGBIO Magnolia biondii HOM05D000330 ORTHO05D000209 2.2e-07 59.3 99 37.4
AT5G39990 Arabidopsis thaliana HOM05D000330 ORTHO05D000209 6.3e-07 57.8 96 43.8
Rhsim08G0064400 Rhododendron simsii HOM05D000330 ORTHO05D000209 3.1e-06 55.5 103 38.8
Ciclev10011781m.g Citrus clementina HOM05D000330 ORTHO05D000209 5.3e-06 54.7 96 36.5


User provided reference genes

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