Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 8.9e-257 889.8 461 100.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.5e-200 703.0 461 80.9
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.3e-191 673.3 474 75.7
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.2e-178 629.4 600 60.5
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.7e-160 569.3 479 64.7
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 7.7e-160 567.8 478 65.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.6e-159 564.7 478 67.2
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.3e-156 556.2 479 63.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 3.7e-154 548.9 481 62.8
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 4.1e-153 545.4 477 62.7
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 8.6e-151 537.7 474 63.1
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 4.3e-150 535.4 474 63.7
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 5.6e-150 535.0 479 61.2
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.2e-149 533.9 478 62.6
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.8e-148 530.0 478 61.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 4.0e-148 528.9 474 62.9
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.5e-147 526.9 472 60.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 3.4e-147 525.8 476 62.0
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 9.8e-147 524.2 474 61.4
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 2.9e-146 522.7 479 62.4
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.9e-146 522.7 481 61.5
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 4.9e-146 521.9 478 60.5
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.1e-145 520.8 476 60.5
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 5.4e-145 518.5 477 60.8
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.7e-144 516.2 476 60.1
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.8e-144 514.6 474 61.0
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.8e-144 514.6 469 61.0
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.3e-143 513.8 469 61.0
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.3e-143 513.1 474 60.8
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.5e-142 509.6 478 61.1
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.2e-141 507.3 482 60.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.2e-141 507.3 474 61.0
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.1e-141 506.5 479 59.1
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.8e-141 506.1 469 60.1
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 3.6e-141 505.8 474 59.5
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 3.1e-140 502.7 475 60.8
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.9e-140 501.1 473 58.8
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.6e-139 499.6 477 60.6
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.3e-138 497.3 477 60.4
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 6.4e-138 495.0 480 58.1
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.1e-137 494.2 468 60.0
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.1e-137 491.5 476 60.7
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 7.1e-137 491.5 490 58.0
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.6e-136 490.3 483 59.0
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.6e-136 488.8 474 58.4
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.0e-136 488.4 472 59.5
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.3e-135 487.3 474 58.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 6.6e-135 485.0 472 58.7
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 6.6e-135 485.0 472 58.7
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.3e-134 482.6 480 58.3
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 6.2e-133 478.4 466 58.8
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.3e-132 476.5 478 55.4
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 6.8e-132 474.9 478 56.7
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.9e-131 471.1 462 57.1
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.1e-129 467.6 462 56.9
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.6e-128 463.8 486 55.3
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.7e-128 463.0 479 55.9
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.0e-127 459.5 462 56.5
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.6e-125 453.8 493 54.4
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 8.1e-125 451.4 461 56.6
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.5e-120 436.0 475 52.6
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.0e-119 434.5 476 53.6
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.7e-119 433.7 406 58.4
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.7e-119 433.7 539 50.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 3.0e-119 433.0 478 54.6
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 1.1e-118 431.0 473 51.2
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.1e-118 431.0 473 51.4
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.5e-118 429.9 476 53.4
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.5e-118 429.9 437 57.2
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.6e-118 428.7 476 51.7
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 9.6e-118 427.9 475 50.9
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.8e-117 426.4 476 52.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 4.8e-117 425.6 479 54.7
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 4.8e-117 425.6 471 51.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.5e-115 419.1 462 51.7
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 9.9e-115 417.9 462 50.9
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.3e-114 417.5 472 50.4
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.3e-114 417.5 481 51.4
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.3e-114 417.5 510 50.4
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.4e-113 414.1 473 51.4
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 3.2e-113 412.9 493 50.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.4e-113 412.1 469 51.4
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 9.3e-113 411.4 473 50.5
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.6e-112 409.1 480 51.0
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.6e-112 409.1 472 51.1
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.0e-112 408.7 472 51.1
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 7.9e-112 408.3 349 61.9
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.0e-111 407.9 469 50.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.0e-111 407.9 475 49.7
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.1e-110 404.4 469 50.5
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.5e-110 403.3 472 49.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 7.4e-110 401.7 471 49.9
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.8e-109 399.1 484 52.3
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 4.8e-109 399.1 470 52.6
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 6.2e-109 398.7 469 50.3
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 8.1e-109 398.3 497 48.3
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 3.4e-107 392.9 483 49.3
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 4.5e-107 392.5 511 46.4
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.2e-106 390.2 483 49.1
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 4.9e-106 389.0 471 49.5
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.2e-104 384.4 481 48.6
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 5.1e-103 379.0 496 48.0
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 6.7e-103 378.6 478 46.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.1e-102 377.9 375 59.2
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.3e-102 376.3 480 48.5
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.3e-102 375.9 473 46.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.1e-101 373.6 478 48.7
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.4e-100 370.9 468 48.9
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.4e-99 366.3 532 44.9
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.3e-98 364.4 494 45.3
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.7e-98 364.0 464 48.1
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.9e-98 363.2 492 46.5
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 4.9e-98 362.5 279 65.9
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 7.1e-97 358.6 471 48.0
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 9.3e-97 358.2 474 46.2
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.6e-96 357.5 373 57.1
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.6e-96 355.9 480 45.2
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.8e-95 354.0 432 48.4
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 5.1e-95 352.4 479 45.5
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 4.3e-94 349.4 475 45.7
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 5.7e-94 349.0 476 45.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 9.6e-94 348.2 484 45.7
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.8e-93 345.9 446 47.1
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.1e-92 342.8 424 49.1
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.6e-91 340.1 429 47.1
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.5e-89 333.6 481 43.7
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 5.1e-87 325.9 305 56.1
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 2.5e-86 323.6 510 41.6
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.5e-83 314.3 367 47.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.2e-82 310.5 454 44.1
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 5.0e-82 309.3 369 50.4
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 6.5e-82 308.9 467 42.8
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.9e-81 307.4 365 48.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.7e-80 303.5 406 45.1
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 3.6e-80 303.1 362 46.4
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.2e-74 283.9 379 48.3
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 2.2e-74 283.9 394 47.0
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.5e-74 282.0 307 49.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 7.2e-73 278.9 353 47.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.6e-72 276.6 242 59.5
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.8e-71 274.2 354 46.0
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 5.2e-71 272.7 214 64.0
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 3.3e-70 270.0 362 45.6
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-69 268.1 474 41.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 2.0e-67 260.8 377 46.2
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.7e-64 250.4 444 38.7
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.6e-64 250.0 329 44.1
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.8e-63 247.7 310 45.2
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.2e-62 245.0 347 43.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.0e-58 231.9 308 42.9
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 4.2e-57 226.5 144 75.7
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.4e-55 221.5 357 40.3
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.3e-55 220.7 351 39.6
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 5.2e-55 219.5 323 39.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.8e-53 213.0 292 41.1
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.5e-49 201.4 263 43.3
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.5e-49 201.4 370 39.5
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.8e-47 194.5 253 46.6
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 5.2e-47 193.0 225 48.4
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.2e-46 191.8 202 53.0
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.5e-46 191.4 265 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 7.5e-46 189.1 316 40.5
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-45 188.3 228 46.5
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 8.9e-39 165.6 102 78.4
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.7e-35 154.1 139 56.8
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.5e-33 147.5 243 40.3
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 6.2e-32 142.9 212 42.9
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.2e-27 128.6 76 82.9
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.9e-25 121.3 80 70.0
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.1e-24 117.9 108 57.4
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 6.2e-24 116.3 209 38.3
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.1e-23 115.5 192 38.5
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.6e-22 110.9 188 38.8
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 5.8e-22 109.8 140 49.3
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.7e-21 108.2 80 67.5
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.4e-20 103.2 86 55.8
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 8.6e-18 95.9 63 71.4
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 6.6e-10 69.7 52 59.6
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 2.0e-06 58.2 34 82.4
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 5.8e-06 56.6 209 26.8


User provided reference genes

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