Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 2.5e-74 282.0 137 100.0
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 1.5e-63 246.1 136 88.2
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 6.4e-62 240.7 137 83.2
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 8.4e-62 240.4 137 82.5
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 1.8e-59 232.6 137 79.6
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 8.7e-59 230.3 137 80.3
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 1.9e-58 229.2 137 78.1
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 1.9e-58 229.2 137 79.6
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 2.5e-58 228.8 137 79.6
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 3.3e-58 228.4 137 80.3
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 7.4e-58 227.3 137 77.4
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.3e-57 226.5 137 79.6
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 2.1e-57 225.7 137 79.6
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 1.1e-56 223.4 137 75.2
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 1.4e-56 223.0 137 75.9
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 3.1e-56 221.9 137 78.8
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 5.3e-56 221.1 129 78.3
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 6.9e-56 220.7 137 76.6
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 6.9e-56 220.7 137 78.1
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 9.0e-56 220.3 137 76.6
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 2.0e-55 219.2 137 75.9
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 3.4e-55 218.4 132 82.6
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 5.8e-55 217.6 134 78.4
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 1.3e-54 216.5 132 81.1
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 1.3e-54 216.5 136 76.5
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 1.3e-54 216.5 136 75.7
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 1.3e-54 216.5 136 75.7
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 1.3e-54 216.5 137 74.5
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 1.7e-54 216.1 137 73.0
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 2.9e-54 215.3 140 75.7
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 3.8e-54 214.9 134 77.6
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 4.9e-54 214.5 137 76.6
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 8.4e-54 213.8 136 79.4
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 1.1e-53 213.4 132 80.3
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 1.4e-53 213.0 132 80.3
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 4.2e-53 211.5 132 80.3
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 4.2e-53 211.5 132 79.5
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 5.5e-53 211.1 135 77.0
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 5.5e-53 211.1 131 76.3
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 5.5e-53 211.1 130 80.8
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 1.2e-52 209.9 136 75.7
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 1.2e-52 209.9 137 73.0
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 1.6e-52 209.5 130 73.8
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 1.6e-52 209.5 137 74.5
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 2.7e-52 208.8 132 78.8
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 3.5e-52 208.4 132 75.0
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 3.5e-52 208.4 146 68.5
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 6.0e-52 207.6 136 74.3
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.0e-51 206.8 130 76.9
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 1.1e-50 203.4 134 72.4
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.5e-50 203.0 130 76.2
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 4.3e-50 201.4 139 71.2
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 4.3e-50 201.4 139 71.2
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 5.7e-50 201.1 137 73.7
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 2.2e-49 199.1 125 75.2
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 3.7e-49 198.4 139 70.5
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 1.1e-48 196.8 107 86.0
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 1.1e-48 196.8 132 73.5
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 1.4e-48 196.4 142 70.4
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 1.4e-48 196.4 139 69.8
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 1.4e-48 196.4 139 69.8
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 1.4e-48 196.4 142 70.4
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 1.4e-48 196.4 107 86.0
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 1.8e-48 196.1 139 69.1
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 1.8e-48 196.1 174 60.3
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 2.4e-48 195.7 133 72.9
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.2e-47 193.4 137 70.1
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 1.5e-47 193.0 139 68.3
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 2.0e-47 192.6 136 69.1
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 2.6e-47 192.2 126 72.2
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 3.4e-47 191.8 184 54.3
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 4.5e-47 191.4 143 68.5
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 5.9e-47 191.0 137 67.2
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 1.0e-46 190.3 139 66.9
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 1.3e-46 189.9 136 67.6
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 1.7e-46 189.5 107 83.2
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 1.7e-46 189.5 135 68.9
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 2.5e-45 185.7 107 80.4
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 2.5e-45 185.7 107 79.4
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 3.2e-45 185.3 123 74.0
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 4.2e-45 184.9 107 78.5
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 7.2e-45 184.1 107 79.4
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 2.1e-44 182.6 130 70.8
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 3.6e-44 181.8 107 82.2
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.1e-42 176.8 106 79.2
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 1.5e-42 176.4 133 64.7
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 1.7e-41 172.9 107 77.6
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 1.5e-39 166.4 107 73.8
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 1.4e-37 159.8 87 90.8
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 1.4e-37 159.8 87 90.8
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 7.2e-37 157.5 87 89.7
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 5.7e-34 147.9 93 79.6
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 3.1e-32 142.1 120 57.5
Dinv25701 Davidia involucrata HOM05D006998 ORTHO05D008733 9.1e-32 140.6 72 88.9
DCAR_011285 Daucus carota HOM05D006998 ORTHO05D008733 1.5e-31 139.8 138 53.6
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 4.5e-31 138.3 88 77.3
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 1.4e-29 133.3 88 75.0
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 1.9e-29 132.9 95 65.3
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 4.2e-29 131.7 101 61.4
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 2.1e-28 129.4 94 66.0
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 4.7e-28 128.3 89 68.5
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 8.8e-27 124.0 82 78.0
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 7.4e-26 120.9 104 54.8
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 2.4e-24 115.9 86 66.3
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 9.1e-24 114.0 91 63.7
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 1.2e-23 113.6 90 65.6
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 3.5e-23 112.1 90 64.4
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 3.8e-22 108.6 95 50.5
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 3.6e-20 102.1 67 70.1
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 1.0e-19 100.5 66 71.2
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 4.0e-19 98.6 66 71.2
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 6.8e-19 97.8 90 57.8
Sed0022519 Sechium edule HOM05D006998 ORTHO05D008733 2.6e-18 95.9 49 83.7
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 7.0e-16 87.8 81 56.8
BcaB01g01217 Brassica carinata HOM05D006998 ORTHO05D008733 3.5e-15 85.5 72 59.7
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 4.2e-13 78.6 69 60.9
Cre09.g413300 Chlamydomonas reinhardtii HOM05D006998 ORTHO05D008733 4.0e-11 72.0 60 51.7
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 1.3e-09 67.0 64 53.1


User provided reference genes

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