Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 3.0e-298 1027.7 501 100.0
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 2.0e-246 855.5 498 82.3
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 5.9e-230 800.8 500 76.0
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 1.6e-219 766.1 501 71.7
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 1.8e-215 752.7 498 71.7
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.0e-214 749.2 502 71.7
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 3.8e-213 745.0 486 73.3
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 3.3e-212 741.9 501 70.3
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 1.0e-210 736.9 401 86.0
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 1.1e-207 726.9 499 68.3
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.2e-207 725.3 502 68.9
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.5e-206 721.8 502 68.9
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-206 721.5 502 68.9
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.0e-206 721.1 502 68.9
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.7e-205 719.5 502 68.1
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.7e-205 719.5 502 68.5
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.3e-205 719.2 502 68.1
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.0e-205 718.8 502 68.1
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 3.0e-205 718.8 479 71.2
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.9e-205 718.4 502 68.7
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 5.0e-205 718.0 480 70.2
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.6e-205 717.2 502 68.1
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.5e-204 716.5 502 68.3
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-204 716.1 502 68.3
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.1e-203 712.6 502 68.1
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.1e-202 710.3 473 71.0
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 6.8e-202 707.6 503 68.0
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.2e-201 706.8 503 68.2
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 2.9e-200 702.2 493 68.4
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 1.4e-199 699.9 496 67.3
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 5.6e-196 688.0 495 67.1
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 1.2e-195 686.8 482 68.5
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 8.1e-195 684.1 507 66.3
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 3.1e-194 682.2 399 78.9
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 5.2e-194 681.4 491 68.4
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.2e-193 680.2 494 66.2
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 9.9e-193 677.2 400 78.0
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.1e-191 673.7 500 65.6
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.2e-190 670.2 492 65.2
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 1.2e-190 670.2 469 68.2
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 1.6e-190 669.8 474 66.9
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 7.8e-190 667.5 397 77.8
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.7e-189 666.4 492 64.4
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 3.0e-189 665.6 401 75.1
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 3.0e-189 665.6 484 66.1
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 8.6e-189 664.1 414 74.2
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 7.3e-188 661.0 468 66.7
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 2.8e-187 659.1 356 83.4
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.8e-187 659.1 400 76.2
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 2.8e-187 659.1 503 63.4
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 6.2e-187 657.9 469 67.0
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 8.1e-187 657.5 470 66.6
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 8.1e-187 657.5 468 65.8
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 2.4e-186 656.0 474 65.2
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 1.7e-184 649.8 490 64.5
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 3.8e-184 648.7 398 75.6
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 8.4e-184 647.5 472 66.5
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 1.4e-183 646.7 400 73.5
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 5.4e-183 644.8 397 74.6
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 4.6e-182 641.7 506 62.5
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 7.8e-182 641.0 400 74.2
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 7.8e-182 641.0 403 72.2
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.7e-181 639.8 390 76.7
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 2.3e-181 639.4 469 64.6
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 5.1e-181 638.3 473 63.4
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.8e-179 632.5 416 70.9
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 3.6e-179 632.1 470 61.5
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 8.1e-179 630.9 404 72.5
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 8.1e-179 630.9 495 61.4
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 5.3e-178 628.2 474 64.8
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 2.6e-177 625.9 477 64.4
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 2.6e-177 625.9 398 72.6
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 3.4e-177 625.5 475 64.8
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 1.7e-176 623.2 395 72.4
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 3.8e-176 622.1 375 74.9
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 1.3e-173 613.6 404 69.8
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 9.9e-169 597.4 401 69.6
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 3.8e-168 595.5 402 67.4
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 1.9e-167 593.2 368 73.1
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 8.7e-165 584.3 369 71.8
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 9.0e-162 574.3 358 71.8
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 3.4e-161 572.4 469 58.8
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 3.8e-160 568.9 351 73.5
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 8.4e-160 567.8 443 62.1
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 1.1e-159 567.4 355 74.4
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 3.7e-155 552.4 402 64.2
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 1.7e-152 543.5 503 53.1
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 2.2e-152 543.1 442 59.3
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.1e-151 540.8 470 58.3
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 7.9e-150 534.6 480 55.2
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 1.8e-146 523.5 496 52.6
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 1.0e-133 481.1 293 77.1
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 9.1e-130 468.0 400 55.5
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.9e-127 460.3 398 56.5
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 3.9e-125 452.6 475 50.9
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 6.5e-120 435.3 352 60.5
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 4.4e-108 396.0 405 49.1
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 2.1e-94 350.5 289 58.5
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.2e-91 340.5 210 76.2
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 4.0e-85 319.7 431 40.4
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 7.8e-81 305.4 434 40.3
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 1.4e-69 268.1 448 35.5
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.4e-69 268.1 301 46.8
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 5.8e-68 262.7 402 39.8
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 6.4e-67 259.2 160 73.8
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 2.6e-44 184.1 222 46.8
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 5.7e-39 166.4 376 29.0
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.1e-31 142.1 93 73.1
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 6.3e-30 136.3 305 32.8
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 1.5e-20 105.1 70 71.4
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 3.4e-20 104.0 288 29.2
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 9.7e-15 85.9 59 62.7
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 2.0e-07 61.6 80 42.5


User provided reference genes

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