Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.8e-107 392.1 225 100.0
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.8e-85 319.7 225 85.3
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 9.8e-84 313.9 222 82.0
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 9.8e-84 313.9 222 82.0
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.8e-77 293.1 231 74.0
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 8.9e-77 290.8 195 80.0
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 8.4e-75 284.3 174 77.6
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 5.4e-74 281.6 201 70.6
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 1.6e-73 280.0 225 73.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.5e-71 273.5 222 73.4
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 2.5e-71 272.7 196 73.0
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 5.6e-71 271.6 193 71.5
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 5.6e-71 271.6 222 73.4
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 7.3e-71 271.2 175 78.3
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.2e-70 270.4 175 76.0
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 3.6e-70 268.9 177 75.1
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.6e-70 268.9 177 75.1
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 4.7e-70 268.5 164 79.3
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.4e-69 266.9 164 78.7
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.8e-69 266.5 175 75.4
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.8e-69 266.5 195 75.4
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 5.2e-69 265.0 175 74.3
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 8.9e-69 264.2 175 74.3
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 8.9e-69 264.2 175 74.3
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 1.5e-68 263.5 175 75.4
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 1.5e-68 263.5 174 76.4
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 3.4e-68 262.3 203 73.4
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 5.8e-68 261.5 224 74.1
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 5.8e-68 261.5 202 71.8
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.3e-67 260.4 227 71.8
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.3e-67 260.4 244 64.3
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 1.7e-67 260.0 175 73.1
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.7e-67 260.0 235 63.4
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 2.2e-67 259.6 163 79.8
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 2.2e-67 259.6 175 73.7
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 2.2e-67 259.6 243 65.0
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 2.9e-67 259.2 173 75.1
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 3.8e-67 258.8 162 79.6
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 4.9e-67 258.5 175 74.3
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 1.4e-66 256.9 225 64.0
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 1.9e-66 256.5 236 64.4
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.4e-66 256.1 144 84.0
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 3.2e-66 255.8 144 83.3
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 5.4e-66 255.0 177 74.0
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.6e-65 253.4 150 80.7
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.6e-65 253.4 144 83.3
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.6e-65 253.4 144 83.3
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 1.6e-65 253.4 144 83.3
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.1e-65 253.1 226 65.5
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 2.7e-65 252.7 161 74.5
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 2.7e-65 252.7 174 71.3
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 3.5e-65 252.3 209 68.9
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 4.6e-65 251.9 176 73.3
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 6.0e-65 251.5 228 66.2
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 7.8e-65 251.1 223 67.3
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 7.8e-65 251.1 222 72.5
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 1.0e-64 250.8 172 75.6
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 1.7e-64 250.0 176 72.2
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 8.7e-64 247.7 203 66.5
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.1e-63 247.3 175 72.0
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.5e-63 246.9 242 61.2
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 4.8e-62 241.9 226 62.4
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 4.8e-62 241.9 134 86.6
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 6.2e-62 241.5 244 61.5
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 6.2e-62 241.5 163 75.5
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 1.1e-61 240.7 147 80.3
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 1.4e-61 240.4 145 78.6
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.4e-61 240.4 145 78.6
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.4e-61 239.6 180 68.3
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 3.1e-61 239.2 165 70.9
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 5.3e-61 238.4 167 68.3
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 5.3e-61 238.4 167 68.3
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 5.3e-61 238.4 145 77.9
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 1.5e-60 236.9 162 71.0
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 2.6e-60 236.1 166 68.1
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 2.6e-60 236.1 166 68.1
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 7.6e-60 234.6 229 60.7
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 9.9e-60 234.2 145 76.6
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 1.3e-59 233.8 239 54.0
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.9e-59 232.6 130 86.2
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 3.8e-59 232.3 144 79.2
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 4.9e-59 231.9 165 70.3
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 8.4e-59 231.1 202 62.4
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.1e-58 230.7 170 70.6
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 3.2e-58 229.2 136 83.8
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 7.1e-58 228.0 223 61.0
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.0e-56 224.2 181 82.3
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 1.3e-54 217.2 287 47.7
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 6.2e-54 214.9 161 67.1
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 5.3e-53 211.8 184 59.2
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 1.8e-48 196.8 147 67.3
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 1.5e-44 183.7 175 54.9
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 1.7e-43 180.3 179 54.7
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 7.1e-42 174.9 162 53.7
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 7.1e-42 174.9 241 54.8
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 2.5e-39 166.4 91 82.4
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.8e-38 162.9 101 79.2
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 2.0e-36 156.8 175 51.4
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 5.9e-36 155.2 188 56.4
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 5.0e-35 152.1 173 49.7
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 1.2e-28 131.0 131 55.7
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 5.9e-28 128.6 188 49.5
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 5.9e-28 128.6 188 49.5
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 4.6e-25 119.0 147 45.6
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 7.9e-25 118.2 96 66.7
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.3e-24 116.7 102 65.7
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.1e-21 107.8 65 90.8
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 5.9e-20 102.1 85 64.7
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 2.3e-16 90.1 108 43.5
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 4.8e-14 82.4 55 74.5
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 4.2e-10 69.3 80 55.0
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 7.2e-10 68.6 37 91.9
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 2.7e-09 66.6 31 83.9
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.3e-08 63.5 31 80.6
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 2.0e-07 60.5 59 52.5
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 6.3e-06 55.5 25 84.0


User provided reference genes

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