Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.4e-124 448.7 213 100.0
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 5.1e-114 414.5 212 90.1
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 9.6e-113 410.2 213 90.6
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 9.9e-110 400.2 213 87.8
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.7e-109 399.4 213 88.3
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.9e-108 396.0 213 87.3
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 7.1e-108 394.0 213 87.3
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 9.3e-108 393.7 211 88.6
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.2e-107 393.3 213 86.4
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 1.6e-107 392.9 213 85.9
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 2.1e-107 392.5 213 85.9
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.1e-107 392.5 213 86.4
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 2.3e-106 389.0 210 87.1
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.9e-106 388.3 213 84.5
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 6.6e-106 387.5 214 86.4
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 8.7e-106 387.1 209 87.1
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 1.1e-105 386.7 213 83.1
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 4.3e-105 384.8 208 87.5
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 9.6e-105 383.6 213 86.4
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.1e-104 382.5 213 85.4
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.8e-104 382.1 213 85.4
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 4.8e-104 381.3 253 75.9
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 4.8e-104 381.3 213 83.6
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 6.2e-104 380.9 213 83.6
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.1e-103 380.2 234 79.9
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.4e-103 379.8 213 85.0
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 3.1e-103 378.6 213 82.6
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 4.0e-103 378.3 211 84.8
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.3e-103 377.9 213 84.0
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 6.9e-103 377.5 211 83.9
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 6.9e-103 377.5 209 85.2
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 9.0e-103 377.1 208 84.6
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 9.0e-103 377.1 213 82.6
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.2e-102 376.7 213 84.0
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 2.0e-102 375.9 209 83.7
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 2.0e-102 375.9 213 84.0
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 2.0e-102 375.9 213 82.6
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 2.6e-102 375.6 213 83.1
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 5.8e-102 374.4 213 81.7
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 7.6e-102 374.0 198 88.9
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 7.6e-102 374.0 213 83.6
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 9.9e-102 373.6 208 83.7
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.3e-101 373.2 213 83.6
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.3e-101 373.2 213 80.8
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.3e-101 373.2 213 81.2
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 1.7e-101 372.9 213 80.3
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.7e-101 372.9 209 84.2
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.7e-101 372.9 209 84.2
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 2.2e-101 372.5 210 80.5
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 2.2e-101 372.5 204 85.3
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.9e-101 372.1 213 82.6
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.9e-101 372.1 209 84.2
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 6.4e-101 370.9 208 84.1
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 8.4e-101 370.5 213 83.6
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 8.4e-101 370.5 209 83.3
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.1e-100 370.2 208 84.1
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.9e-100 369.4 210 79.5
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.9e-100 369.4 208 82.7
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.9e-100 369.4 209 83.7
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.4e-100 369.0 209 83.3
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 4.2e-100 368.2 213 82.6
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 7.1e-100 367.5 208 82.7
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.6e-99 366.3 213 81.7
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 2.1e-99 365.9 213 79.8
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.1e-99 365.9 209 82.3
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.6e-99 364.8 209 80.4
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 7.9e-99 364.0 213 81.7
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 7.9e-99 364.0 211 82.0
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.0e-98 363.6 208 82.2
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.3e-98 363.2 208 80.8
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.7e-98 362.8 206 81.6
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.7e-98 362.8 207 82.1
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 2.3e-98 362.5 213 78.9
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 8.7e-98 360.5 204 81.9
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 8.7e-98 360.5 213 80.8
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 8.7e-98 360.5 206 81.1
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 1.1e-97 360.1 208 79.3
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.1e-97 360.1 213 80.8
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 1.9e-97 359.4 208 80.8
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 2.5e-97 359.0 205 80.5
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 2.5e-97 359.0 210 80.0
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.5e-97 359.0 213 80.3
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 3.3e-97 358.6 208 80.8
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 4.3e-97 358.2 208 80.8
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 4.3e-97 358.2 210 80.0
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 4.3e-97 358.2 210 80.0
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 5.6e-97 357.8 210 80.0
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 5.6e-97 357.8 206 80.1
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 7.3e-97 357.5 208 81.2
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 7.3e-97 357.5 208 81.2
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 9.6e-97 357.1 208 80.3
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 1.6e-96 356.3 208 80.8
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 2.1e-96 355.9 208 80.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 2.1e-96 355.9 213 80.8
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 2.8e-96 355.5 206 79.6
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 3.6e-96 355.1 213 77.5
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 4.8e-96 354.8 193 85.5
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 8.1e-96 354.0 208 79.3
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 8.1e-96 354.0 213 79.8
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 1.8e-95 352.8 209 76.1
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 6.9e-95 350.9 213 79.3
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 9.0e-95 350.5 211 78.7
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 7.6e-94 347.4 233 72.1
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 1.3e-93 346.7 217 79.3
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 1.4e-92 343.2 208 78.4
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 4.2e-92 341.7 209 75.6
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 9.3e-92 340.5 217 73.3
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.9e-90 335.1 202 76.2
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 6.7e-90 334.3 209 73.2
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.5e-89 332.4 295 59.3
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 2.8e-88 328.9 202 74.3
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 3.7e-88 328.6 202 75.2
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 6.2e-88 327.8 209 72.2
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.5e-86 321.6 214 74.3
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 7.6e-86 320.9 201 72.1
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 7.6e-86 320.9 178 87.6
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.7e-85 319.7 212 73.6
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 2.5e-84 315.8 166 88.0
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 1.0e-82 310.5 173 86.1
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 7.9e-75 284.3 429 42.7
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 4.5e-70 268.5 145 84.8
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 2.2e-69 266.2 145 84.8
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 1.0e-66 257.3 145 80.0
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.0e-65 253.1 171 70.8
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 4.3e-65 251.9 204 62.3
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.6e-54 216.9 141 71.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 1.6e-54 216.9 113 88.5
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 2.8e-48 196.1 191 51.8
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 1.4e-47 193.7 125 74.4
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 4.1e-47 192.2 200 48.5
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 7.0e-47 191.4 109 83.5
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 3.4e-41 172.6 201 43.3
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.7e-38 162.9 97 81.4
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 1.3e-37 160.6 88 80.7
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.7e-37 160.2 143 55.2
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 2.1e-35 153.3 99 76.8
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 8.8e-34 147.9 79 88.6
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 2.6e-33 146.4 73 90.4
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 4.9e-24 115.5 74 75.7
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 6.4e-24 115.2 69 78.3
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 3.5e-22 109.4 66 81.8
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.1e-20 104.4 60 86.7
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.1e-20 104.4 72 69.4
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 6.2e-11 72.0 40 85.0
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 6.2e-11 72.0 59 67.8
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 8.9e-10 68.2 35 85.7
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 5.8e-09 65.5 32 90.6
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 2.2e-08 63.5 35 74.3


User provided reference genes

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