Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 2.4e-187 658.7 328 100.0
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 6.8e-134 481.1 329 72.9
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 5.4e-123 444.9 352 66.2
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 3.5e-114 415.6 323 64.7
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 8.6e-113 411.0 317 64.0
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 1.9e-112 409.8 318 65.4
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 3.3e-112 409.1 310 65.5
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.6e-111 406.8 331 62.8
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 1.4e-110 403.7 335 61.8
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 1.8e-110 403.3 286 68.2
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 6.8e-110 401.4 330 60.9
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 1.3e-108 397.1 335 60.6
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 6.4e-108 394.8 328 60.4
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 3.2e-107 392.5 325 61.8
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 4.1e-107 392.1 322 60.6
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 5.4e-107 391.7 323 60.1
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 7.1e-107 391.3 323 60.4
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 2.1e-106 389.8 342 58.2
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 6.0e-106 388.3 322 60.2
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 7.8e-106 387.9 351 58.1
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 1.0e-105 387.5 321 61.7
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.0e-105 387.5 322 59.6
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.3e-105 386.3 330 59.7
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 6.6e-105 384.8 334 58.1
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 3.3e-104 382.5 336 59.8
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 5.6e-104 381.7 355 56.9
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 7.3e-104 381.3 336 58.6
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.8e-102 376.7 334 58.4
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 3.1e-102 375.9 330 60.3
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 4.0e-102 375.6 334 58.1
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 6.8e-102 374.8 328 57.3
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 8.9e-102 374.4 330 60.0
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 1.2e-101 374.0 331 58.3
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 1.5e-101 373.6 331 58.6
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.5e-101 373.6 331 58.6
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 2.0e-101 373.2 328 59.8
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 3.4e-101 372.5 320 60.9
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 3.4e-101 372.5 319 61.1
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 9.9e-101 370.9 337 57.3
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.3e-100 370.5 326 56.7
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.7e-100 370.2 335 58.2
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 2.2e-100 369.8 328 57.0
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 6.4e-100 368.2 327 58.4
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 8.4e-100 367.9 331 57.1
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 3.2e-99 365.9 319 58.0
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 9.3e-99 364.4 321 60.4
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.6e-98 363.6 327 57.2
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 2.7e-98 362.8 301 59.1
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 3.5e-98 362.5 339 55.2
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 3.5e-98 362.5 336 55.1
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 3.5e-98 362.5 319 58.3
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 7.8e-98 361.3 288 61.5
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.0e-97 360.9 337 54.3
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.7e-97 360.1 346 54.3
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 5.1e-97 358.6 347 55.0
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 6.6e-97 358.2 341 56.0
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 6.6e-97 358.2 358 52.0
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 1.5e-96 357.1 301 58.5
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 1.9e-96 356.7 338 53.8
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 5.6e-96 355.1 358 52.0
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 5.6e-96 355.1 285 58.9
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 9.6e-96 354.4 341 54.3
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 9.6e-96 354.4 334 56.0
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.3e-95 354.0 337 54.6
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 3.6e-95 352.4 348 52.9
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 6.2e-95 351.7 360 50.6
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 6.2e-95 351.7 343 53.6
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 6.2e-95 351.7 331 55.3
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.1e-94 350.9 266 65.0
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 2.4e-94 349.7 337 53.4
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 3.1e-94 349.4 360 51.1
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 5.3e-94 348.6 323 55.1
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 6.9e-94 348.2 345 53.0
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 9.0e-94 347.8 331 52.6
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 2.0e-93 346.7 315 55.9
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.7e-92 343.6 383 49.6
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 2.2e-92 343.2 316 56.6
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 2.2e-92 343.2 336 57.4
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 3.8e-92 342.4 354 52.3
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 4.9e-92 342.0 316 56.3
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 9.3e-91 337.8 345 53.3
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 9.3e-91 337.8 355 53.0
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 3.5e-90 335.9 252 66.7
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 3.0e-89 332.8 296 52.4
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 5.1e-89 332.0 316 54.7
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 5.1e-89 332.0 341 53.1
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 8.7e-89 331.3 286 61.5
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 1.1e-88 330.9 341 50.1
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 3.3e-88 329.3 344 49.7
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 4.3e-88 328.9 357 49.0
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 1.6e-87 327.0 319 53.9
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 8.1e-87 324.7 343 54.8
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 1.5e-85 320.5 349 53.6
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 3.4e-85 319.3 321 50.2
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 4.9e-84 315.5 345 48.7
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 7.1e-83 311.6 349 50.7
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.9e-82 308.1 341 47.2
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 7.9e-82 308.1 378 47.6
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 1.9e-75 287.0 329 48.9
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 6.7e-73 278.5 283 52.3
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 1.5e-61 240.7 227 52.0
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.8e-57 227.3 338 40.8
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 3.7e-55 219.5 186 55.9
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 5.3e-54 215.7 338 39.9
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.5e-53 214.2 179 59.8
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 8.8e-49 198.4 317 36.9
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 2.6e-48 196.8 315 36.2
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 3.7e-47 193.0 243 39.1
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.6e-42 177.6 214 46.3
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 5.3e-38 162.5 214 40.7
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.3e-38 162.5 219 37.0
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 1.2e-37 161.4 203 38.9
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.2e-37 161.4 212 39.2
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.5e-36 155.6 206 39.3
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.1e-35 154.8 219 37.4
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.1e-35 154.8 224 38.8
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.9e-35 154.1 214 38.3
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.1e-34 149.1 205 37.1
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.6e-32 143.7 207 38.6
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.9e-29 132.5 368 29.3
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 3.8e-28 129.8 107 60.7
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 5.7e-24 115.9 107 57.9
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 1.2e-21 108.2 169 34.9
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 3.8e-20 103.2 125 40.8
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.8e-17 94.4 85 56.5
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 1.2e-16 91.7 102 45.1


User provided reference genes

Program Settings