Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 9.4e-229 796.6 421 100.0
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 6.1e-188 661.0 421 83.6
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 1.7e-185 652.9 446 78.5
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 5.2e-171 604.7 421 75.8
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 5.2e-163 578.2 421 73.6
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.7e-161 573.2 419 73.7
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 2.3e-158 562.8 419 72.8
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 1.6e-156 556.6 423 72.3
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.1e-155 553.9 422 71.8
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 5.2e-155 551.6 423 72.3
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.2e-155 551.6 423 72.3
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.8e-154 548.1 423 72.1
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.7e-153 546.6 419 71.4
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.7e-153 546.6 454 68.3
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 1.1e-152 543.9 421 69.6
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 9.3e-152 540.8 422 68.7
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 1.1e-149 533.9 340 82.9
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.1e-149 533.9 435 69.2
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 5.6e-149 531.6 421 68.9
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.6e-148 530.0 414 70.5
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.1e-148 529.6 422 70.9
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-147 526.2 378 75.4
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 3.1e-147 525.8 420 70.0
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 9.0e-147 524.2 422 70.6
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 2.0e-146 523.1 420 67.4
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.0e-146 523.1 397 72.8
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.2e-145 519.6 419 69.5
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 5.4e-144 515.0 426 66.0
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 2.7e-143 512.7 417 69.1
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 3.0e-142 509.2 426 66.2
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.1e-141 507.3 458 64.2
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.1e-141 507.3 369 71.8
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-141 506.1 347 78.4
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 3.3e-141 505.8 413 68.3
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 5.6e-141 505.0 433 66.1
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 3.7e-140 502.3 369 72.1
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.4e-139 500.4 418 67.5
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.8e-139 500.0 427 67.4
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 4.0e-139 498.8 421 64.4
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 5.3e-139 498.4 426 66.4
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 5.3e-139 498.4 423 65.2
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 5.3e-139 498.4 372 71.5
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 9.0e-139 497.7 426 62.4
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 7.6e-138 494.6 437 64.5
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 9.9e-138 494.2 423 63.8
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.4e-136 490.3 414 65.2
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.9e-136 490.0 418 64.6
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 2.7e-135 486.1 415 65.5
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 6.0e-135 485.0 498 58.6
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.0e-134 484.2 472 62.9
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 1.3e-132 477.2 426 64.3
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 2.8e-132 476.1 341 74.5
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 3.7e-132 475.7 433 62.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.5e-130 470.3 351 69.5
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 1.5e-130 470.3 423 64.1
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.3e-129 467.2 427 62.3
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 4.9e-129 465.3 324 75.6
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 1.1e-128 464.2 434 61.8
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 1.4e-128 463.8 388 64.7
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 1.9e-128 463.4 388 64.9
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 3.2e-128 462.6 382 67.0
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 7.9e-127 458.0 378 66.4
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 2.3e-126 456.4 375 66.7
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 8.7e-126 454.5 396 62.9
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.9e-125 453.4 338 68.3
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 3.7e-124 449.1 374 65.5
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 3.7e-124 449.1 374 65.5
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-123 447.6 404 60.1
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 4.1e-123 445.7 374 65.8
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 6.9e-123 444.9 390 63.1
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 4.5e-122 442.2 392 63.3
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 8.5e-121 438.0 402 58.7
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.1e-117 427.6 364 65.4
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 3.3e-117 426.0 356 66.6
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 1.3e-116 424.1 361 61.8
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 8.2e-116 421.4 369 66.1
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 1.0e-113 414.5 322 68.3
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.7e-113 413.7 348 62.4
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 2.9e-113 412.9 416 56.5
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.4e-112 410.6 278 77.3
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 3.9e-110 402.5 478 52.1
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 5.1e-110 402.1 410 57.3
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.1e-109 401.0 388 57.5
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.3e-109 399.4 332 60.8
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.2e-103 380.9 354 60.2
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.2e-103 380.9 324 66.0
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 4.7e-103 379.0 291 70.4
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 5.2e-102 375.6 364 56.3
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 8.5e-97 358.2 408 52.7
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.6e-95 354.0 461 49.0
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.8e-94 350.5 371 55.5
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 2.0e-93 347.1 262 71.0
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.2e-87 327.8 244 71.3
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.7e-84 317.4 432 48.8
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 1.0e-81 308.1 342 54.1
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.8e-78 297.4 422 45.0
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 4.0e-78 296.2 223 71.3
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 2.6e-77 293.5 238 63.4
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 5.7e-77 292.4 219 70.8
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 1.6e-74 284.3 183 78.1
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 3.5e-74 283.1 242 68.2
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 2.1e-71 273.9 258 57.4
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 1.4e-70 271.2 243 67.5
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.7e-68 264.2 417 40.8
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 4.9e-68 262.7 232 61.2
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 5.6e-64 249.2 328 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 6.8e-62 242.3 246 53.3
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 8.3e-60 235.3 324 46.3
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 2.7e-58 230.3 233 61.4
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 6.6e-57 225.7 351 40.5
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 2.9e-52 210.3 235 53.2
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 4.1e-51 206.5 234 57.3
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 2.1e-50 204.1 189 56.1
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.2e-47 194.9 142 72.5
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 8.9e-46 188.7 127 74.8
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 2.2e-44 184.1 352 36.6
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.1e-43 181.8 373 35.9
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-38 165.2 204 41.7
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 2.0e-37 161.0 131 63.4
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 3.2e-35 153.7 305 31.5
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 3.5e-34 150.2 168 53.6
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 4.6e-34 149.8 100 79.0
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.8e-34 149.1 330 33.9
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 3.9e-33 146.7 102 74.5
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 5.1e-33 146.4 131 57.3
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.1e-33 146.4 124 67.7
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 6.2e-31 139.4 336 31.0
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 8.1e-31 139.0 131 51.9
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.8e-30 137.9 356 29.2
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-30 137.5 82 90.2
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 5.3e-30 136.3 120 59.2
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 2.0e-29 134.4 84 78.6
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 2.6e-29 134.0 117 66.7
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.4e-29 133.7 379 30.6
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.4e-27 128.3 113 64.6
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 9.3e-27 125.6 156 45.5
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.5e-24 118.2 157 43.9
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 3.1e-22 110.5 66 84.8
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.2e-21 108.6 80 73.8
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.6e-21 107.5 59 91.5
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 4.5e-21 106.7 68 85.3
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 7.6e-21 105.9 74 67.6
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 2.2e-20 104.4 154 41.6
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 8.4e-20 102.4 104 52.9
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 2.5e-19 100.9 65 78.5
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 1.0e-17 95.5 113 50.4
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.2e-15 85.9 55 81.8
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 3.4e-13 80.5 65 61.5
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.3e-12 78.6 59 69.5
RcHm_v2.0_Chr5g0029301 Rosa chinensis HOM05D000943 ORTHO05D008314 2.2e-12 77.8 394 25.4
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 2.9e-12 77.4 422 24.6
unitig_62.g23077 Utricularia gibba HOM05D000943 ORTHO05D008314 2.5e-11 74.3 363 25.3
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 9.3e-11 72.4 379 24.5
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 2.7e-10 70.9 66 56.1
Sopen12g001380 Solanum pennellii HOM05D000943 ORTHO05D008314 2.7e-10 70.9 402 24.1
PGSC0003DMG400019027 Solanum tuberosum HOM05D000943 ORTHO05D008314 2.7e-10 70.9 405 24.7
Solyc12g005410.2 Solanum lycopersicum HOM05D000943 ORTHO05D008314 4.6e-10 70.1 402 24.1
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.0e-09 67.4 52 67.3
GSVIVG01014085001 Vitis vinifera HOM05D000943 ORTHO05D008314 3.0e-09 67.4 344 25.9
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 7.4e-08 62.8 35 82.9
Cre02.g095086 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 1.3e-07 62.0 237 23.6
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 1.3e-07 62.0 65 58.5
PSO675G4586 Papaver somniferum HOM05D000943 ORTHO05D008314 2.8e-07 60.8 411 22.9
Hund10402 Selenicereus undatus HOM05D000943 ORTHO05D008314 2.8e-07 60.8 347 22.2
ATR0763G119 Amborella trichopoda HOM05D000943 ORTHO05D008314 4.8e-07 60.1 334 24.6
Cre02.g095085 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 8.2e-07 59.3 220 23.2
TWI38G0474 Tripterygium wilfordii HOM05D000943 ORTHO05D008314 9.0e-06 55.8 279 24.7


User provided reference genes

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