Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1594.7 805 100.0
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1247.3 854 74.0
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1244.6 853 73.3
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1241.1 855 75.0
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1238.8 861 73.1
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1236.1 857 73.7
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1233.8 843 75.0
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1231.1 854 73.7
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1229.2 854 73.7
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1222.6 854 72.8
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1219.1 852 73.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1216.1 882 71.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1214.1 847 73.1
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1211.4 844 72.4
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1208.4 850 73.1
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1204.1 844 71.9
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1194.5 815 74.6
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1194.1 765 79.0
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1189.1 856 71.4
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1189.1 857 71.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1188.3 857 72.3
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1183.7 859 70.5
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1180.6 853 70.3
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 821 72.4
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1174.8 852 70.9
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1174.5 765 77.4
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1173.7 854 71.0
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1172.9 859 70.3
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1167.9 853 70.0
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1166.0 857 69.0
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1162.5 1008 64.1
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1162.1 861 70.6
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1161.7 848 70.6
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1152.1 858 69.2
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 844 69.0
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1150.6 873 68.4
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1149.4 849 70.1
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 856 68.7
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1147.9 854 70.1
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1147.1 849 70.0
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 855 70.1
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1144.4 849 69.8
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1143.6 849 69.3
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1138.6 830 70.6
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1135.2 845 69.0
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1133.6 884 67.5
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1129.0 856 67.6
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 858 68.4
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1125.5 727 76.8
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1122.1 852 68.5
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1120.1 866 67.6
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1119.4 859 66.5
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1117.8 854 67.9
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1117.8 849 68.3
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1116.7 858 68.1
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1116.3 856 68.3
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1114.4 961 63.4
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1112.4 858 66.8
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1110.5 837 68.0
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 833 68.9
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1105.5 855 66.7
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1101.3 858 65.3
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1098.2 762 72.7
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1094.7 757 75.2
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1093.2 849 66.1
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1093.2 849 66.0
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1091.3 870 66.2
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1088.6 856 66.2
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1085.1 840 66.5
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1084.7 841 66.9
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1083.9 931 62.7
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1081.6 863 65.2
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1080.9 857 64.4
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1079.7 854 64.5
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1079.3 856 65.3
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1079.3 923 62.7
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 2.2e-311 1072.0 853 65.3
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 2.8e-311 1071.6 913 62.8
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 3.9e-311 1071.2 856 64.6
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 3.9e-308 1061.2 918 63.0
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 2.5e-307 1058.5 703 75.4
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 2.5e-307 1058.5 859 66.1
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 3.3e-307 1058.1 859 64.8
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 2.1e-301 1038.9 740 70.4
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 3.9e-300 1034.6 855 64.1
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 6.7e-300 1033.9 859 63.7
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 1.1e-299 1033.1 860 63.3
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 1.1e-299 1033.1 860 63.3
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.3e-299 1031.2 846 63.9
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 1.6e-298 1029.2 833 64.3
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 5.3e-297 1024.2 846 62.5
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 7.6e-296 1020.4 856 62.9
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 1.9e-294 1015.8 849 62.5
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 4.6e-293 1011.1 857 62.4
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 4.6e-293 1011.1 857 62.4
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 4.6e-293 1011.1 851 62.5
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.0e-292 1010.0 849 63.0
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 1.0e-292 1010.0 836 63.9
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.0e-292 1010.0 849 63.1
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 8.7e-292 1006.9 849 62.9
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 6.5e-287 990.7 861 61.6
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.5e-286 988.8 870 60.7
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.8e-284 982.6 830 62.2
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 2.5e-278 962.2 717 67.4
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 4.4e-275 951.4 719 67.7
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.2e-272 943.3 758 64.8
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 3.3e-267 925.2 844 58.4
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 5.3e-265 917.9 673 71.0
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.6e-261 905.2 739 63.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 2.7e-256 889.0 534 84.5
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 8.5e-255 884.0 836 58.0
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.1e-253 879.4 837 57.5
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 2.3e-252 875.9 840 56.0
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 4.0e-252 875.2 767 59.5
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 5.4e-249 864.8 666 66.8
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.6e-216 756.9 775 55.4
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 2.6e-211 739.6 856 50.6
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 3.2e-209 732.6 850 48.9
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 2.4e-204 716.5 538 68.4
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.2e-193 679.5 467 72.6
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 8.7e-183 644.8 869 44.1
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.3e-181 641.0 793 46.0
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 3.7e-181 639.4 864 44.4
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 6.1e-168 595.5 758 46.7
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 9.7e-166 588.2 461 67.9
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.2e-162 577.0 493 64.3
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.4e-159 567.8 469 63.8
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 7.2e-153 545.4 387 72.6
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 3.0e-151 540.0 537 55.1
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 5.2e-151 539.3 453 62.0
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.4e-148 531.2 390 70.5
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.6e-147 527.7 467 60.6
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 5.5e-145 519.2 796 41.1
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 4.7e-136 489.6 738 42.8
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 6.1e-128 462.6 327 72.8
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 3.4e-118 430.3 300 72.3
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 3.3e-113 413.7 467 49.9
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 8.0e-112 409.1 312 69.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 8.9e-111 405.6 312 67.0
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.3e-109 401.7 383 55.4
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 8.3e-109 399.1 343 63.3
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 9.2e-92 342.4 219 73.5
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.6e-91 340.1 205 81.5
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 7.4e-73 279.6 173 75.7
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.1e-72 278.1 287 52.3
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 2.0e-70 271.6 245 59.2
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 2.4e-63 248.1 181 65.7
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 4.5e-62 243.8 158 78.5
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.0e-53 213.8 131 79.4
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 6.9e-47 193.4 224 50.0
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 5.9e-46 190.3 219 53.4
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 3.2e-44 184.5 491 30.5
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.0e-33 148.7 109 67.0
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 3.1e-31 141.4 112 67.0
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 4.1e-31 141.0 128 61.7
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 1.0e-29 136.3 72 93.1
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 6.1e-27 127.1 155 51.0
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 7.2e-20 103.6 77 71.4
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 3.4e-17 94.7 112 54.5
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.4e-15 89.4 92 53.3
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 8.0e-11 73.6 60 60.0
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 5.7e-09 67.4 35 82.9
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 5.7e-09 67.4 35 82.9
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 5.7e-09 67.4 35 82.9
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 4.9e-08 64.3 66 57.6
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.5e-06 57.8 35 74.3
Oeu032726.1 Olea europaea HOM05D004192 ORTHO05D004917 4.5e-06 57.8 72 50.0
MBI17_g46746_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 7.8e-06 57.0 48 60.4


User provided reference genes

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