Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.3e-36 155.2 87 100.0
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 2.8e-18 95.1 74 70.3
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 1.5e-16 89.4 80 67.5
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.0e-16 89.0 76 65.8
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 5.8e-16 87.4 81 66.7
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.6e-16 87.0 76 64.5
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.6e-16 87.0 82 62.2
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.3e-15 86.3 89 57.3
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.3e-15 86.3 73 65.8
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.7e-15 85.9 79 65.8
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.7e-15 85.9 85 63.5
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.2e-15 85.5 78 65.4
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 6.4e-15 84.0 83 62.7
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 8.4e-15 83.6 73 68.5
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 8.4e-15 83.6 73 68.5
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 8.4e-15 83.6 83 68.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.1e-14 83.2 78 64.1
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.4e-14 82.8 74 63.5
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.9e-14 82.4 76 64.5
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.9e-14 82.4 74 63.5
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.9e-14 82.4 77 66.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.9e-14 82.4 82 61.0
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 2.4e-14 82.0 84 59.5
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 2.4e-14 82.0 84 59.5
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 2.4e-14 82.0 84 59.5
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.4e-14 82.0 73 68.5
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.4e-14 82.0 72 62.5
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.4e-14 82.0 76 64.5
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.4e-14 82.0 76 64.5
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 3.2e-14 81.6 77 64.9
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 4.2e-14 81.3 84 59.5
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 4.2e-14 81.3 84 59.5
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 4.2e-14 81.3 73 65.8
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.2e-14 81.3 78 65.4
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 7.1e-14 80.5 79 64.6
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.1e-14 80.5 88 56.8
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 9.2e-14 80.1 84 60.7
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 9.2e-14 80.1 85 56.5
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 9.2e-14 80.1 79 62.0
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 9.2e-14 80.1 80 58.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.6e-13 79.3 79 63.3
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.6e-13 79.3 79 64.6
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.6e-13 79.3 73 65.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.1e-13 79.0 84 57.1
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 2.7e-13 78.6 75 56.0
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 2.7e-13 78.6 75 56.0
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.7e-13 78.6 88 55.7
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 2.7e-13 78.6 72 63.9
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.7e-13 78.6 79 62.0
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 3.5e-13 78.2 70 68.6
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.5e-13 78.2 87 57.5
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 3.5e-13 78.2 76 65.8
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.5e-13 78.2 89 57.3
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 3.5e-13 78.2 72 58.3
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 4.6e-13 77.8 73 63.0
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 4.6e-13 77.8 77 61.0
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 4.6e-13 77.8 70 64.3
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 4.6e-13 77.8 72 59.7
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 4.6e-13 77.8 75 61.3
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 6.0e-13 77.4 72 68.1
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 6.0e-13 77.4 70 64.3
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 7.8e-13 77.0 71 62.0
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.0e-12 76.6 73 61.6
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.0e-12 76.6 83 62.7
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.3e-12 76.3 73 56.2
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.3e-12 76.3 71 64.8
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.3e-12 76.3 85 52.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.3e-12 76.3 74 62.2
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.3e-12 76.3 89 56.2
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-12 75.9 77 58.4
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.7e-12 75.9 77 61.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 2.3e-12 75.5 66 63.6
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 2.3e-12 75.5 71 57.7
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.3e-12 75.5 71 60.6
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 3.0e-12 75.1 67 62.7
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.0e-12 75.1 71 66.2
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.0e-12 75.1 85 56.5
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.0e-12 75.1 67 64.2
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.9e-12 74.7 77 61.0
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 3.9e-12 74.7 67 64.2
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.1e-12 74.3 73 58.9
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 6.6e-12 73.9 85 56.5
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 8.7e-12 73.6 69 63.8
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 8.7e-12 73.6 65 67.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.1e-11 73.2 73 61.6
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.1e-11 73.2 65 66.2
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.1e-11 73.2 65 66.2
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.5e-11 72.8 73 58.9
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.5e-11 72.8 79 54.4
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.9e-11 72.4 66 63.6
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 2.5e-11 72.0 65 66.2
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.3e-11 71.6 70 61.4
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 3.3e-11 71.6 75 58.7
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.6e-11 70.9 70 61.4
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 5.6e-11 70.9 68 58.8
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 9.6e-11 70.1 76 57.9
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 9.6e-11 70.1 66 63.6
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 9.6e-11 70.1 66 65.2
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 9.6e-11 70.1 65 63.1
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 9.6e-11 70.1 69 58.0
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.6e-11 70.1 71 57.7
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.3e-10 69.7 76 59.2
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.3e-10 69.7 76 59.2
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.3e-10 69.7 76 59.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.3e-10 69.7 77 53.2
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.6e-10 69.3 72 56.9
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.6e-10 69.3 71 56.3
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.1e-10 68.9 65 55.4
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 2.1e-10 68.9 68 57.4
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.1e-10 68.9 71 54.9
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 2.1e-10 68.9 71 56.3
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.6e-10 68.2 80 56.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.8e-10 67.8 70 58.6
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 6.2e-10 67.4 76 57.9
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 6.2e-10 67.4 69 56.5
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.2e-10 67.4 78 56.4
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 8.1e-10 67.0 84 51.2
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.4e-09 66.2 76 56.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.4e-09 66.2 72 55.6
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 1.8e-09 65.9 84 48.8
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.1e-09 65.1 65 60.0
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 3.1e-09 65.1 66 59.1
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.1e-09 65.1 73 56.2
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 4.0e-09 64.7 69 55.1
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 4.0e-09 64.7 71 52.1
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 5.3e-09 64.3 81 46.9
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 5.3e-09 64.3 56 64.3
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 6.9e-09 63.9 62 56.5
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.9e-09 63.9 87 51.7
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.5e-08 62.8 63 58.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.5e-08 62.8 85 51.8
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 2.6e-08 62.0 72 54.2
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.6e-08 62.0 74 52.7
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 2.6e-08 62.0 85 51.8
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 3.4e-08 61.6 71 54.9
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 4.4e-08 61.2 57 61.4
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.4e-08 61.2 87 50.6
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 4.4e-08 61.2 75 56.0
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 5.8e-08 60.8 73 56.2
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 9.9e-08 60.1 58 60.3
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 9.9e-08 60.1 86 47.7
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.3e-07 59.7 63 54.0
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.3e-07 59.7 63 54.0
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.7e-07 59.3 67 56.7
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 2.9e-07 58.5 59 57.6
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 2.9e-07 58.5 67 55.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 8.4e-07 57.0 67 44.8


User provided reference genes

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