Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.4e-145 518.8 270 100.0
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 4.1e-129 464.9 274 87.2
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 5.8e-123 444.5 260 86.5
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.9e-122 442.2 271 85.2
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 8.4e-114 414.1 274 78.8
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 8.4e-114 414.1 274 79.2
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.4e-113 413.3 267 77.9
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 4.2e-113 411.8 274 78.8
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.6e-112 409.8 267 77.9
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 2.1e-112 409.5 270 78.9
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.7e-111 406.4 271 76.8
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 6.6e-111 404.4 270 77.0
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.5e-110 402.5 270 76.3
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.5e-110 402.5 270 79.3
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.6e-109 399.8 270 77.4
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 2.1e-109 399.4 271 76.0
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 3.6e-109 398.7 270 76.7
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 6.2e-109 397.9 270 75.9
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.1e-108 397.1 270 75.6
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 2.4e-108 396.0 271 74.2
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 5.3e-108 394.8 267 75.3
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 5.3e-108 394.8 268 76.1
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 9.0e-108 394.0 264 75.4
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.2e-107 393.7 272 75.7
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.2e-107 393.7 271 77.1
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-107 393.7 286 71.0
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.5e-107 393.3 270 75.6
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.6e-107 392.5 275 72.7
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 3.4e-107 392.1 270 75.2
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 3.4e-107 392.1 271 74.5
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 3.4e-107 392.1 279 75.3
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 9.9e-107 390.6 268 75.4
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 3.8e-106 388.7 271 77.1
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 4.9e-106 388.3 273 74.0
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-105 387.1 276 72.5
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-105 386.7 276 72.8
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.3e-105 384.0 273 73.3
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-104 383.3 276 72.1
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.7e-104 382.5 270 73.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 3.5e-104 382.1 303 67.3
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 4.6e-104 381.7 269 72.9
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 6.0e-104 381.3 273 72.2
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 1.3e-103 380.2 273 72.2
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.8e-103 379.8 273 71.1
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.8e-103 379.8 273 71.1
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.8e-103 379.8 273 72.5
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.8e-103 379.8 276 71.7
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 3.0e-103 379.0 270 71.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 3.0e-103 379.0 271 73.1
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.0e-103 379.0 273 71.4
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.1e-102 377.1 272 72.8
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 4.3e-102 375.2 270 70.7
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 7.4e-102 374.4 273 70.3
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.8e-101 372.5 275 70.2
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.7e-101 372.1 271 70.1
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.8e-100 369.8 268 70.5
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 4.5e-99 365.2 273 70.3
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.3e-98 363.6 277 69.7
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 2.9e-98 362.5 270 69.6
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 4.9e-98 361.7 274 69.7
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.5e-98 361.3 286 67.5
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.4e-97 360.1 270 70.0
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.9e-97 359.8 268 69.0
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.2e-97 359.0 245 73.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 5.5e-97 358.2 270 71.1
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 5.5e-97 358.2 246 75.2
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 7.1e-97 357.8 272 68.8
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.1e-96 356.3 272 69.5
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 7.9e-96 354.4 272 69.1
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.8e-95 353.2 272 69.1
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.3e-95 352.8 274 68.6
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.9e-94 349.7 264 69.3
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.9e-94 349.7 264 70.1
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.5e-94 349.4 338 57.4
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 4.3e-94 348.6 273 68.9
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 4.3e-94 348.6 257 71.6
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.3e-93 347.1 270 67.4
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.6e-93 346.7 268 66.0
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.8e-93 345.1 271 67.2
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 6.9e-92 341.3 270 66.7
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.6e-91 339.3 270 66.3
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.0e-90 337.4 268 65.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.9e-89 333.2 271 64.6
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.2e-88 330.5 219 75.3
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 7.9e-88 327.8 260 64.6
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 2.2e-82 309.7 245 64.1
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 5.0e-82 308.5 273 64.5
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 3.2e-81 305.8 266 61.7
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 9.4e-81 304.3 255 63.9
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.4e-79 300.4 275 59.6
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.0e-75 286.6 268 58.6
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 5.0e-74 282.0 189 75.1
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 4.7e-72 275.4 261 55.9
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 7.9e-72 274.6 287 54.7
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.3e-71 273.1 181 75.7
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 6.7e-71 271.6 270 55.9
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-67 260.8 194 67.5
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.7e-66 256.9 245 60.0
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 8.2e-61 238.0 245 55.1
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 8.5e-58 228.0 263 48.3
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 2.1e-56 223.4 198 63.1
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.5e-54 217.2 265 46.4
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.3e-53 214.2 151 70.9
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.8e-52 210.3 346 42.5
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 2.0e-51 206.8 258 43.4
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 5.9e-51 205.3 226 47.8
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.4e-39 167.5 132 64.4
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.2e-39 165.6 115 77.4
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-38 164.5 115 76.5
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.2e-36 156.4 108 75.0
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 5.9e-35 152.1 140 57.9
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 7.8e-35 151.8 127 61.4
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 6.6e-34 148.7 112 69.6
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.8e-31 140.6 160 50.0
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 2.3e-31 140.2 84 82.1
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 8.9e-31 138.3 146 53.4
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 5.8e-30 135.6 84 78.6
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 7.8e-27 125.2 275 33.1
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 3.0e-26 123.2 112 62.5
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 8.6e-26 121.7 104 61.5
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.1e-25 121.3 109 61.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 7.3e-25 118.6 111 59.5
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 9.5e-25 118.2 239 33.1
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 6.4e-21 105.5 66 77.3
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-20 104.8 56 83.9
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.9e-20 104.0 74 70.3
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.2e-19 101.3 75 70.7
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.3e-18 97.8 116 50.0
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.7e-18 97.4 58 84.5
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 8.6e-18 95.1 109 48.6
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.5e-17 93.6 80 62.5
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.2e-16 91.3 103 53.4
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 4.6e-11 72.8 83 51.8
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.7e-10 70.9 98 42.9
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 5.1e-10 69.3 68 55.9
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-07 61.2 56 51.8


User provided reference genes

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